Literature DB >> 8887635

Essential role of NF-E2 in remodeling of chromatin structure and transcriptional activation of the epsilon-globin gene in vivo by 5' hypersensitive site 2 of the beta-globin locus control region.

Q H Gong1, J C McDowell, A Dean.   

Abstract

Much of our understanding of the process by which enhancers activate transcription has been gained from transient-transfection studies in which the DNA is not assembled with histones and other chromatin proteins as it is in the cell nucleus. To study the activation of a mammalian gene in a natural chromatin context in vivo, we constructed a minichromosome containing the human epsilon-globin gene and portions of the beta-globin locus control region (LCR). The minichromosomes replicate and are maintained at stable copy number in human erythroid cells. Expression of the minichromosomal epsilon-globin gene requires the presence of beta-globin LCR elements in cis, as is the case for the chromosomal gene. We determined the chromatin structure of the epsilon-globin gene in both the active and inactive states. The transcriptionally inactive locus is covered by an array of positioned nucleosomes extending over 1,400 bp. In minichromosomes with a (mu)LCR or DNase I-hypersensitive site 2 (HS2) which actively transcribe the epsilon-globin gene, the nucleosome at the promoter is altered or disrupted while positioning of nucleosomes in the rest of the locus is retained. All or virtually all minichromosomes are simultaneously hypersensitive to DNase I both at the promoter and at HS2. Transcriptional activation and promoter remodeling, as well as formation of the HS2 structure itself, depended on the presence of the NF-E2 binding motif in HS2. The nucleosome at the promoter which is altered upon activation is positioned over the transcriptional elements of the epsilon-globin gene, i.e., the TATA, CCAAT, and CACCC elements, and the GATA-1 site at -165. The simple availability of erythroid transcription factors that recognize these motifs is insufficient to allow expression. As in the chromosomal globin locus, regulation also occurs at the level of chromatin structure. These observations are consistent with the idea that one role of the beta-globin LCR is to maintain promoters free of nucleosomes. The restricted structural change observed upon transcriptional activation may indicate that the LCR need only make a specific contact with the proximal gene promoter to activate transcription.

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Year:  1996        PMID: 8887635      PMCID: PMC231608          DOI: 10.1128/MCB.16.11.6055

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  76 in total

1.  Mutational analysis of the chicken beta-globin enhancer reveals two positive-acting domains.

Authors:  M Reitman; G Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  1988-09       Impact factor: 11.205

2.  The formation and function of DNase I hypersensitive sites in the process of gene activation.

Authors:  S C Elgin
Journal:  J Biol Chem       Date:  1988-12-25       Impact factor: 5.157

3.  Dual promoter activation by the human beta-globin locus control region.

Authors:  E H Bresnick; G Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  1994-02-15       Impact factor: 11.205

4.  Regulated expression of the beta-globin gene locus in synthetic nuclei.

Authors:  M C Barton; B M Emerson
Journal:  Genes Dev       Date:  1994-10-15       Impact factor: 11.361

5.  Multiple elements in human beta-globin locus control region 5' HS 2 are involved in enhancer activity and position-independent, transgene expression.

Authors:  J J Caterina; D J Ciavatta; D Donze; R R Behringer; T M Townes
Journal:  Nucleic Acids Res       Date:  1994-03-25       Impact factor: 16.971

6.  The ubiquitous subunit of erythroid transcription factor NF-E2 is a small basic-leucine zipper protein related to the v-maf oncogene.

Authors:  N C Andrews; K J Kotkow; P A Ney; H Erdjument-Bromage; P Tempst; S H Orkin
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-15       Impact factor: 11.205

7.  The mouse albumin promoter and a distal upstream site are simultaneously DNase I hypersensitive in liver chromatin and bind similar liver-abundant factors in vitro.

Authors:  J K Liu; Y Bergman; K S Zaret
Journal:  Genes Dev       Date:  1988-05       Impact factor: 11.361

8.  GATA1 and YY1 are developmental repressors of the human epsilon-globin gene.

Authors:  N Raich; C H Clegg; J Grofti; P H Roméo; G Stamatoyannopoulos
Journal:  EMBO J       Date:  1995-02-15       Impact factor: 11.598

9.  NF-E2 and GATA binding motifs are required for the formation of DNase I hypersensitive site 4 of the human beta-globin locus control region.

Authors:  J A Stamatoyannopoulos; A Goodwin; T Joyce; C H Lowrey
Journal:  EMBO J       Date:  1995-01-03       Impact factor: 11.598

10.  Constitutive binding of EBNA1 protein to the Epstein-Barr virus replication origin, oriP, with distortion of DNA structure during latent infection.

Authors:  D J Hsieh; S M Camiolo; J L Yates
Journal:  EMBO J       Date:  1993-12-15       Impact factor: 11.598

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  29 in total

1.  Structural and functional cross-talk between a distant enhancer and the epsilon-globin gene promoter shows interdependence of the two elements in chromatin.

Authors:  J C McDowell; A Dean
Journal:  Mol Cell Biol       Date:  1999-11       Impact factor: 4.272

2.  Acetylation of a specific promoter nucleosome accompanies activation of the epsilon-globin gene by beta-globin locus control region HS2.

Authors:  C Y Gui; A Dean
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

3.  Reconstitution of human beta-globin locus control region hypersensitive sites in the absence of chromatin assembly.

Authors:  K M Leach; K Nightingale; K Igarashi; P P Levings; J D Engel; P B Becker; J Bungert
Journal:  Mol Cell Biol       Date:  2001-04       Impact factor: 4.272

4.  A human globin enhancer causes both discrete and widespread alterations in chromatin structure.

Authors:  AeRi Kim; Ann Dean
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

5.  USF and NF-E2 cooperate to regulate the recruitment and activity of RNA polymerase II in the beta-globin gene locus.

Authors:  Zhuo Zhou; Xingguo Li; Changwang Deng; Paul A Ney; Suming Huang; Jörg Bungert
Journal:  J Biol Chem       Date:  2010-03-17       Impact factor: 5.157

6.  Heterogeneous nuclear ribonucleoprotein C1/C2, MeCP1, and SWI/SNF form a chromatin remodeling complex at the beta-globin locus control region.

Authors:  Milind C Mahajan; Geeta J Narlikar; Gokul Boyapaty; Robert E Kingston; Sherman M Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-10       Impact factor: 11.205

7.  Distinctive signatures of histone methylation in transcribed coding and noncoding human beta-globin sequences.

Authors:  AeRi Kim; Christine M Kiefer; Ann Dean
Journal:  Mol Cell Biol       Date:  2006-12-11       Impact factor: 4.272

8.  Beta-globin intergenic transcription and histone acetylation dependent on an enhancer.

Authors:  Aeri Kim; Hui Zhao; Ina Ifrim; Ann Dean
Journal:  Mol Cell Biol       Date:  2007-02-05       Impact factor: 4.272

9.  High-resolution analysis of DNA synthesis start sites and nucleosome architecture at efficient mammalian replication origins.

Authors:  Rodrigo Lombraña; Ricardo Almeida; Isabel Revuelta; Sofia Madeira; Gonzalo Herranz; Néstor Saiz; Ugo Bastolla; María Gómez
Journal:  EMBO J       Date:  2013-08-30       Impact factor: 11.598

10.  Chromatin architecture and transcription factor binding regulate expression of erythrocyte membrane protein genes.

Authors:  Laurie A Steiner; Yelena Maksimova; Vincent Schulz; Clara Wong; Debasish Raha; Milind C Mahajan; Sherman M Weissman; Patrick G Gallagher
Journal:  Mol Cell Biol       Date:  2009-08-17       Impact factor: 4.272

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