Literature DB >> 8855252

Potential use of additivity of mutational effects in simplifying protein engineering.

M M Skinner1, T C Terwilliger.   

Abstract

The problem of rationally engineering protein molecules can be simplified where effects of mutations on protein function are additive. Crystal structures of single and double mutants in the hydrophobic core of gene V protein indicate that structural and functional effects of core mutations are additive when the regions structurally influenced by the mutations do not substantially overlap. These regions of influence can provide a simple basis for identifying sets of mutations that will show additive effects.

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Year:  1996        PMID: 8855252      PMCID: PMC38227          DOI: 10.1073/pnas.93.20.10753

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  Isolation and in vitro characterization of temperature-sensitive mutants of the bacteriophage f1 gene V protein.

Authors:  H B Zabin; T C Terwilliger
Journal:  J Mol Biol       Date:  1991-05-20       Impact factor: 5.469

2.  Two mutations in recombinant Hb beta F41(C7)Y, K82 (EF6)D show additive effects in decreasing oxygen affinity.

Authors:  A Dumoulin; L Kiger; N Griffon; C Vasseur; I Kister; P Génin; M C Marden; J Pagnier; C Poyart
Journal:  Protein Sci       Date:  1996-01       Impact factor: 6.725

3.  Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes.

Authors:  J W Ponder; F M Richards
Journal:  J Mol Biol       Date:  1987-02-20       Impact factor: 5.469

4.  Replacements of Pro86 in phage T4 lysozyme extend an alpha-helix but do not alter protein stability.

Authors:  T Alber; J A Bell; D P Sun; H Nicholson; J A Wozniak; S Cook; B W Matthews
Journal:  Science       Date:  1988-02-05       Impact factor: 47.728

5.  Diffraction methods for biological macromolecules. Interactive computer graphics: FRODO.

Authors:  T A Jones
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

6.  Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles.

Authors:  G Schreiber; A R Fersht
Journal:  J Mol Biol       Date:  1995-04-28       Impact factor: 5.469

7.  Structure of the gene V protein of bacteriophage f1 determined by multiwavelength x-ray diffraction on the selenomethionyl protein.

Authors:  M M Skinner; H Zhang; D H Leschnitzer; Y Guan; H Bellamy; R M Sweet; C W Gray; R N Konings; A H Wang; T C Terwilliger
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-15       Impact factor: 11.205

8.  In vivo characterization of mutants of the bacteriophage f1 gene V protein isolated by saturation mutagenesis.

Authors:  T C Terwilliger; H B Zabin; M P Horvath; W S Sandberg; P M Schlunk
Journal:  J Mol Biol       Date:  1994-02-18       Impact factor: 5.469

9.  Patterns of nonadditivity between pairs of stability mutations in staphylococcal nuclease.

Authors:  S M Green; D Shortle
Journal:  Biochemistry       Date:  1993-09-28       Impact factor: 3.162

10.  Alanine scanning mutagenesis of the alpha-helix 115-123 of phage T4 lysozyme: effects on structure, stability and the binding of solvent.

Authors:  M Blaber; W A Baase; N Gassner; B W Matthews
Journal:  J Mol Biol       Date:  1995-02-17       Impact factor: 5.469

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  12 in total

1.  Kinetic, mechanistic, and structural aspects of unliganded gating of acetylcholine receptor channels: a single-channel study of second transmembrane segment 12' mutants.

Authors:  C Grosman; A Auerbach
Journal:  J Gen Physiol       Date:  2000-05       Impact factor: 4.086

2.  A structural view of evolutionary divergence.

Authors:  B Spiller; A Gershenson; F H Arnold; R C Stevens
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

3.  Local complexity of amino acid interactions in a protein core.

Authors:  Rajul K Jain; Rama Ranganathan
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-18       Impact factor: 11.205

4.  Relevant double mutations in bioengineered Streptomyces clavuligerus deacetoxycephalosporin C synthase result in higher binding specificities which improve penicillin bioconversion.

Authors:  Kian Sim Goo; Chun Song Chua; Tiow-Suan Sim
Journal:  Appl Environ Microbiol       Date:  2007-12-14       Impact factor: 4.792

5.  New insight into long-range nonadditivity within protein double-mutant cycles.

Authors:  Andrei Y Istomin; M Michael Gromiha; Oleg K Vorov; Donald J Jacobs; Dennis R Livesay
Journal:  Proteins       Date:  2008-02-15

6.  Analyses of the stability and function of three surface mutants (R82C, K69H, and L32R) of the gene V protein from Ff phage by X-ray crystallography.

Authors:  S Su; Y G Gao; H Zhang; T C Terwilliger; A H Wang
Journal:  Protein Sci       Date:  1997-04       Impact factor: 6.725

7.  Deep Sequencing-guided Design of a High Affinity Dual Specificity Antibody to Target Two Angiogenic Factors in Neovascular Age-related Macular Degeneration.

Authors:  Patrick Koenig; Chingwei V Lee; Sarah Sanowar; Ping Wu; Jeremy Stinson; Seth F Harris; Germaine Fuh
Journal:  J Biol Chem       Date:  2015-06-18       Impact factor: 5.157

8.  Asymmetric and independent contribution of the second transmembrane segment 12' residues to diliganded gating of acetylcholine receptor channels: a single-channel study with choline as the agonist.

Authors:  C Grosman; A Auerbach
Journal:  J Gen Physiol       Date:  2000-05       Impact factor: 4.086

9.  Thermostabilization of the uronate dehydrogenase from Agrobacterium tumefaciens by semi-rational design.

Authors:  Teresa Roth; Barbara Beer; André Pick; Volker Sieber
Journal:  AMB Express       Date:  2017-05-23       Impact factor: 3.298

10.  Fitness loss and library size determination in saturation mutagenesis.

Authors:  Yuval Nov
Journal:  PLoS One       Date:  2013-07-03       Impact factor: 3.240

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