Literature DB >> 8134350

Structure of the gene V protein of bacteriophage f1 determined by multiwavelength x-ray diffraction on the selenomethionyl protein.

M M Skinner1, H Zhang, D H Leschnitzer, Y Guan, H Bellamy, R M Sweet, C W Gray, R N Konings, A H Wang, T C Terwilliger.   

Abstract

The crystal structure of the dimeric gene V protein of bacteriophage f1 was determined using multiwavelength anomalous diffraction on the selenomethionine-containing wild-type and isoleucine-47-->methionine mutant proteins with x-ray diffraction data phased to 2.5 A resolution. The structure of the wild-type protein has been refined to an R factor of 19.2% using native data to 1.8 A resolution. The structure of the gene V protein was used to obtain a model for the protein portion of the gene V protein-single-stranded DNA complex.

Entities:  

Mesh:

Substances:

Year:  1994        PMID: 8134350      PMCID: PMC43311          DOI: 10.1073/pnas.91.6.2071

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Gene 5 protein-DNA complex: modeling binding interactions.

Authors:  D L Hutchinson; B L Barnett; A M Bobst
Journal:  J Biomol Struct Dyn       Date:  1990-08

2.  Translational repression in bacteriophage f1: characterization of the gene V protein target on the gene II mRNA.

Authors:  B Michel; N D Zinder
Journal:  Proc Natl Acad Sci U S A       Date:  1989-06       Impact factor: 11.205

3.  Isolation and in vitro characterization of temperature-sensitive mutants of the bacteriophage f1 gene V protein.

Authors:  H B Zabin; T C Terwilliger
Journal:  J Mol Biol       Date:  1991-05-20       Impact factor: 5.469

4.  Gene V protein-mediated translational regulation of the synthesis of gene II protein of the filamentous bacteriophage M13: a dispensable function of the filamentous-phage genome.

Authors:  G J Zaman; A M Kaan; J G Schoenmakers; R N Konings
Journal:  J Bacteriol       Date:  1992-01       Impact factor: 3.490

5.  Three-dimensional structure of complexes of single-stranded DNA-binding proteins with DNA. IKe and fd gene 5 proteins form left-handed helices with single-stranded DNA.

Authors:  C W Gray
Journal:  J Mol Biol       Date:  1989-07-05       Impact factor: 5.469

6.  The binding of fd gene 5 protein to polydeoxynucleotides: evidence from CD measurements for two binding modes.

Authors:  J W Kansy; B A Clack; D M Gray
Journal:  J Biomol Struct Dyn       Date:  1986-06

7.  Role of coliphage M13 gene 5 in single-stranded DNA production.

Authors:  J S Salstrom; D Pratt
Journal:  J Mol Biol       Date:  1971-11-14       Impact factor: 5.469

8.  Two-dimensional 1H nuclear magnetic resonance studies on the gene V-encoded single-stranded DNA-binding protein of the filamentous bacteriophage IKe. I. Structure elucidation of the DNA-binding wing.

Authors:  E A de Jong; J P van Duynhoven; B J Harmsen; R N Konings; C W Hilbers
Journal:  J Mol Biol       Date:  1989-03-05       Impact factor: 5.469

9.  Two-dimensional 1H nuclear magnetic resonance studies on the gene V-encoded single-stranded DNA-binding protein of the filamentous bacteriophage IKe. II. Characterization of the DNA-binding wing with the aid of spin-labelled oligonucleotides.

Authors:  E A de Jong; J P van Duynhoven; B J Harmsen; G I Tesser; R N Konings; C W Hilbers
Journal:  J Mol Biol       Date:  1989-03-05       Impact factor: 5.469

10.  Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure.

Authors:  W A Hendrickson; J R Horton; D M LeMaster
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598

View more
  30 in total

1.  Sequence-structure mapping errors in the PDB: OB-fold domains.

Authors:  Ceslovas Venclovas; Krzysztof Ginalski; Chulhee Kang
Journal:  Protein Sci       Date:  2004-05-07       Impact factor: 6.725

2.  Direct measurement of oligonucleotide binding stoichiometry of gene V protein by mass spectrometry.

Authors:  X Cheng; A C Harms; P N Goudreau; T C Terwilliger; R D Smith
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-09       Impact factor: 11.205

3.  Sorting the chaff from the wheat at the PDB.

Authors:  Dale E Tronrud; Brian W Matthews
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

4.  The high binding affinity of phosphorothioate-modified oligomers for Ff gene 5 protein is moderated by the addition of C-5 propyne or 2'-O-methyl modifications.

Authors:  Tung-Chung Mou; Donald M Gray
Journal:  Nucleic Acids Res       Date:  2002-02-01       Impact factor: 16.971

5.  Analyses of the stability and function of three surface mutants (R82C, K69H, and L32R) of the gene V protein from Ff phage by X-ray crystallography.

Authors:  S Su; Y G Gao; H Zhang; T C Terwilliger; A H Wang
Journal:  Protein Sci       Date:  1997-04       Impact factor: 6.725

6.  Potential use of additivity of mutational effects in simplifying protein engineering.

Authors:  M M Skinner; T C Terwilliger
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-01       Impact factor: 11.205

7.  The human EBNA-2 coactivator p100: multidomain organization and relationship to the staphylococcal nuclease fold and to the tudor protein involved in Drosophila melanogaster development.

Authors:  I Callebaut; J P Mornon
Journal:  Biochem J       Date:  1997-01-01       Impact factor: 3.857

8.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

9.  Automated main-chain model building by template matching and iterative fragment extension.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-12-19

10.  Improving macromolecular atomic models at moderate resolution by automated iterative model building, statistical density modification and refinement.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-06-27
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.