Literature DB >> 8849422

Problems and Promises of Assaying the Genetic Potential for Nitrogen Fixation in the Marine Environment

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Abstract

Nitrogen fixation in the sea has attracted the attention of ecologists for decades. Much is known about the habitats in which it occurs and some of the factors that limit N2 fixation activity in different environments, but we still know little about the organisms that fix nitrogen, and what limits the growth and distribution of these organisms in marine environments. Molecular biology technological developments have provided tools for detecting and characterizing N2-fixing organisms in the environment. These techniques hold great promise for unraveling the mysteries and paradoxes of N2 fixation in the sea. In this review, we address the theoretical basis for the use of a molecular approach to N2 fixation, highlight the strengths and weaknesses of the approach, and provide case studies that demonstrate the potential contribution of molecular biology approaches to studies of N2 fixation in the sea.

Entities:  

Year:  1996        PMID: 8849422     DOI: 10.1007/bf00183062

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  38 in total

Review 1.  Applications of the polymerase chain reaction in environmental microbiology.

Authors:  A K Bej; M H Mahbubani
Journal:  PCR Methods Appl       Date:  1992-02

2.  Diversity of heterotrophic nitrogen fixation genes in a marine cyanobacterial mat.

Authors:  J P Zehr; M Mellon; S Braun; W Litaker; T Steppe; H W Paerl
Journal:  Appl Environ Microbiol       Date:  1995-07       Impact factor: 4.792

3.  Basis for Diel Variation in Nitrogenase Activity in the Marine Planktonic Cyanobacterium Trichodesmium thiebautii.

Authors:  D G Capone; J M O'neil; J Zehr; E J Carpenter
Journal:  Appl Environ Microbiol       Date:  1990-11       Impact factor: 4.792

4.  Identification of the sources of energy for nitrogen fixation and physiological characterization of nitrogen-fixing members of a marine microbial mat community.

Authors:  B M Bebout; M W Fitzpatrick; H W Paerl
Journal:  Appl Environ Microbiol       Date:  1993-05       Impact factor: 4.792

5.  Nitrogen Fixation Associated with Rinsed Roots and Rhizomes of the Eelgrass Zostera marina.

Authors:  D G Capone; J M Budin
Journal:  Plant Physiol       Date:  1982-12       Impact factor: 8.340

6.  Nitrogen fixation by floating diatom mats: a source of new nitrogen to oligotrophic ocean waters.

Authors:  L Martínez; M W Silver; J M King; A L Alldredge
Journal:  Science       Date:  1983-07-08       Impact factor: 47.728

7.  Crystallographic structure of the nitrogenase iron protein from Azotobacter vinelandii.

Authors:  M M Georgiadis; H Komiya; P Chakrabarti; D Woo; J J Kornuc; D C Rees
Journal:  Science       Date:  1992-09-18       Impact factor: 47.728

8.  Genetic diversity in Sargasso Sea bacterioplankton.

Authors:  S J Giovannoni; T B Britschgi; C L Moyer; K G Field
Journal:  Nature       Date:  1990-05-03       Impact factor: 49.962

9.  Nitrogen fixation in sediments and the rhizosphere of the seagrassZostera capricorni.

Authors:  M J O'Donohue; D J Moriarty; I C Rae
Journal:  Microb Ecol       Date:  1991-12       Impact factor: 4.552

10.  The Ribosomal Database Project.

Authors:  B L Maidak; N Larsen; M J McCaughey; R Overbeek; G J Olsen; K Fogel; J Blandy; C R Woese
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

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  27 in total

1.  Diversity of sulfate-reducing bacteria in oxic and anoxic regions of a microbial mat characterized by comparative analysis of dissimilatory sulfite reductase genes.

Authors:  D Minz; J L Flax; S J Green; G Muyzer; Y Cohen; M Wagner; B E Rittmann; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

2.  Expression of nifH genes in natural microbial assemblages in Lake George, New York, detected by reverse transcriptase PCR.

Authors:  S Zani; M T Mellon; J L Collier; J P Zehr
Journal:  Appl Environ Microbiol       Date:  2000-07       Impact factor: 4.792

3.  Diversity and detection of nitrate assimilation genes in marine bacteria.

Authors:  A E Allen; M G Booth; M E Frischer; P G Verity; J P Zehr; S Zani
Journal:  Appl Environ Microbiol       Date:  2001-11       Impact factor: 4.792

4.  Diversity of diazotrophic unicellular cyanobacteria in the tropical North Atlantic Ocean.

Authors:  Luisa I Falcón; Frank Cipriano; Andrei Y Chistoserdov; Edward J Carpenter
Journal:  Appl Environ Microbiol       Date:  2002-11       Impact factor: 4.792

5.  Changes in nitrogen-fixing and ammonia-oxidizing bacterial communities in soil of a mixed conifer forest after wildfire.

Authors:  Chris M Yeager; Diana E Northup; Christy C Grow; Susan M Barns; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2005-05       Impact factor: 4.792

6.  New nitrogen-fixing microorganisms detected in oligotrophic oceans by amplification of Nitrogenase (nifH) genes.

Authors:  J P Zehr; M T Mellon; S Zani
Journal:  Appl Environ Microbiol       Date:  1998-09       Impact factor: 4.792

7.  The Use of Degenerate Primers in qPCR Analysis of Functional Genes Can Cause Dramatic Quantification Bias as Revealed by Investigation of nifH Primer Performance.

Authors:  John Christian Gaby; Daniel H Buckley
Journal:  Microb Ecol       Date:  2017-04-07       Impact factor: 4.552

8.  Diazotrophic diversity in the rhizosphere of two exotic weed plants, Prosopis juliflora and Parthenium hysterophorus.

Authors:  B Cibichakravarthy; R Preetha; S P Sundaram; K Kumar; D Balachandar
Journal:  World J Microbiol Biotechnol       Date:  2011-07-30       Impact factor: 3.312

9.  Phylogenetic diversity of nitrogenase (nifH) genes in deep-sea and hydrothermal vent environments of the Juan de Fuca Ridge.

Authors:  Mausmi P Mehta; David A Butterfield; John A Baross
Journal:  Appl Environ Microbiol       Date:  2003-02       Impact factor: 4.792

10.  Environment-dependent distribution of the sediment nifH-harboring microbiota in the Northern South China Sea.

Authors:  Hongyue Dang; Jinying Yang; Jing Li; Xiwu Luan; Yunbo Zhang; Guizhou Gu; Rongrong Xue; Mingyue Zong; Martin G Klotz
Journal:  Appl Environ Microbiol       Date:  2012-10-12       Impact factor: 4.792

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