Literature DB >> 11679368

Diversity and detection of nitrate assimilation genes in marine bacteria.

A E Allen1, M G Booth, M E Frischer, P G Verity, J P Zehr, S Zani.   

Abstract

A PCR approach was used to construct a database of nasA genes (called narB genes in cyanobacteria) and to detect the genetic potential for heterotrophic bacterial nitrate utilization in marine environments. A nasA-specific PCR primer set that could be used to selectively amplify the nasA gene from heterotrophic bacteria was designed. Using seawater DNA extracts obtained from microbial communities in the South Atlantic Bight, the Barents Sea, and the North Pacific Gyre, we PCR amplified and sequenced nasA genes. Our results indicate that several groups of heterotrophic bacterial nasA genes are common and widely distributed in oceanic environments.

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Year:  2001        PMID: 11679368      PMCID: PMC93313          DOI: 10.1128/AEM.67.11.5343-5348.2001

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  27 in total

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Authors:  C Moreno-Vivián; P Cabello; M Martínez-Luque; R Blasco; F Castillo
Journal:  J Bacteriol       Date:  1999-11       Impact factor: 3.490

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Journal:  Appl Environ Microbiol       Date:  1982-04       Impact factor: 4.792

4.  Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture.

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Journal:  Appl Environ Microbiol       Date:  1996-12       Impact factor: 4.792

5.  TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment.

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Journal:  Comput Appl Biosci       Date:  1994-09

6.  Use of degenerate oligonucleotides for amplification of the nifH gene from the marine cyanobacterium Trichodesmium thiebautii.

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Journal:  Appl Environ Microbiol       Date:  1989-10       Impact factor: 4.792

7.  Problems and Promises of Assaying the Genetic Potential for Nitrogen Fixation in the Marine Environment

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Journal:  Microb Ecol       Date:  1996-11       Impact factor: 4.552

8.  Structures of genes nasA and nasB, encoding assimilatory nitrate and nitrite reductases in Klebsiella pneumoniae M5al.

Authors:  J T Lin; B S Goldman; V Stewart
Journal:  J Bacteriol       Date:  1993-04       Impact factor: 3.490

9.  Characterization of nitrogen-fixing bacteria from a temperate saltmarsh lagoon, including isolates that produce ethane from acetylene.

Authors:  B J Tibbles; D E Rawlings
Journal:  Microb Ecol       Date:  1994-01       Impact factor: 4.552

10.  Nucleotide sequence of the nar beta gene encoding assimilatory nitrate reductase from the cyanobacterium Oscillatoria chalybea.

Authors:  M Unthan; W Klipp; G H Schmid
Journal:  Biochim Biophys Acta       Date:  1996-02-07
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  20 in total

Review 1.  Nitrogen cycling in the ocean: new perspectives on processes and paradigms.

Authors:  Jonathan P Zehr; Bess B Ward
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

2.  Diazotrophic diversity and distribution in the tropical and subtropical Atlantic Ocean.

Authors:  Rebecca J Langlois; Julie LaRoche; Philipp A Raab
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

3.  Vertical Distribution of Bacterial Communities in the Indian Ocean as Revealed by Analyses of 16S rRNA and nasA Genes.

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Journal:  Indian J Microbiol       Date:  2016-04-19       Impact factor: 2.461

4.  The Pseudomonas syringae pv. actinidiae chemoreceptor protein F (PscF) periplasmic sensor domain: cloning, purification and X-ray crystallographic analysis.

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Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2017-11-24       Impact factor: 1.056

Review 5.  Biological sources and sinks of nitrous oxide and strategies to mitigate emissions.

Authors:  Andrew J Thomson; Georgios Giannopoulos; Jules Pretty; Elizabeth M Baggs; David J Richardson
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-05-05       Impact factor: 6.237

6.  Antipathogenic potential of marine Bacillus sp. SS4 on N-acyl-homoserine-lactone-mediated virulence factors production in Pseudomonas aeruginosa (PAO1).

Authors:  K Syed Musthafa; V Saroja; S Karutha Pandian; A Veera Ravi
Journal:  J Biosci       Date:  2011-03       Impact factor: 1.826

7.  Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation.

Authors:  Kennan Kellaris Salinero; Keith Keller; William S Feil; Helene Feil; Stephan Trong; Genevieve Di Bartolo; Alla Lapidus
Journal:  BMC Genomics       Date:  2009-08-03       Impact factor: 3.969

8.  Diversity of assimilatory nitrate reductase genes from plankton and epiphytes associated with a seagrass bed.

Authors:  Anita Adhitya; Florence I M Thomas; Bess B Ward
Journal:  Microb Ecol       Date:  2007-09-13       Impact factor: 4.552

9.  Diversity and abundance of nitrate assimilation genes in the northern South china sea.

Authors:  Haiyuan Cai; Nianzhi Jiao
Journal:  Microb Ecol       Date:  2008-05-15       Impact factor: 4.552

10.  Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time.

Authors:  Ramunas Stepanauskas; Michael E Sieracki
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

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