Literature DB >> 8843135

High-resolution diffusion and relaxation edited one- and two-dimensional 1H NMR spectroscopy of biological fluids.

M Liu1, J K Nicholson, J C Lindon.   

Abstract

A new approach to the characterization of biomolecules in whole biological fluids is presented based on simplification of 1H NMR spectra by utilizing differences in molecular diffusion coefficients alone and combinations of relaxation and diffusion parameters. New NMR pulse sequences incorporating both spectral editing features together with solvent water resonance elimination are presented. The methods are exemplified using whole human blood plasma, and it is shown that it is possible to obtain NMR spectra of the slowly diffusing species (generally large molecules) by diffusion editing, the slowly relaxing species (generally small molecules) by spin relaxation editing, or spectra showing any range of molecular mobility using a combination of the two methods. The diffusion-based editing methods are also applicable to the selection of resonances in two-dimensional NMR spectroscopy of biofluids, and we show this for the first time by the production of 1H-1H diffusion-edited TOCSY spectra of human blood plasma where the resonance intensities are weighted according to the molecular diffusion coefficient. In this case, by measuring a diffusion-edited 1H-1H TOCSY NMR spectrum of plasma, it is possible to obtain signals from only the macromolecular components, and this may be of benefit in the analysis of blood lipoproteins. In complex biofluids, the combination of diffusion and relaxation editing brings about considerable spectral simplification leading to an easier resonance assignment process. We also demonstrate the production of 1H NMR spectra with intensities corresponding to diffusion coefficient rather than number of protons, and this opens up new possibilities for pattern recognition classification of samples based on altered molecular mobility features of biofluid components.

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Year:  1996        PMID: 8843135     DOI: 10.1021/ac960426p

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  12 in total

1.  Determination of the relative NH proton lifetimes of the peptide analogue viomycin in aqueous solution by NMR-based diffusion measurement.

Authors:  M Liu; H C Toms; G E Hawkes; J K Nicholson; J C Lindon
Journal:  J Biomol NMR       Date:  1999-01       Impact factor: 2.835

Review 2.  Metabonomics techniques and applications to pharmaceutical research & development.

Authors:  John C Lindon; Elaine Holmes; Jeremy K Nicholson
Journal:  Pharm Res       Date:  2006-05-25       Impact factor: 4.200

3.  Identifying unknown metabolites using NMR-based metabolic profiling techniques.

Authors:  Isabel Garcia-Perez; Joram M Posma; Jose Ivan Serrano-Contreras; Claire L Boulangé; Queenie Chan; Gary Frost; Jeremiah Stamler; Paul Elliott; John C Lindon; Elaine Holmes; Jeremy K Nicholson
Journal:  Nat Protoc       Date:  2020-07-17       Impact factor: 13.491

4.  Accurate estimation of diffusion coefficient for molecular identification in a complex background.

Authors:  Bin Yuan; Xu Zhang; Ghulam Mustafa Kamal; Bin Jiang; Maili Liu
Journal:  Anal Bioanal Chem       Date:  2020-05-14       Impact factor: 4.142

5.  Quantification of 1H NMR Spectra from Human Plasma.

Authors:  Robin A de Graaf; Hetty Prinsen; Cosimo Giannini; Sonia Caprio; Raimund I Herzog
Journal:  Metabolomics       Date:  2015-07-05       Impact factor: 4.290

6.  Human metabolic profiles are stably controlled by genetic and environmental variation.

Authors:  George Nicholson; Mattias Rantalainen; Anthony D Maher; Jia V Li; Daniel Malmodin; Kourosh R Ahmadi; Johan H Faber; Ingileif B Hallgrímsdóttir; Amy Barrett; Henrik Toft; Maria Krestyaninova; Juris Viksna; Sudeshna Guha Neogi; Marc-Emmanuel Dumas; Ugis Sarkans; Bernard W Silverman; Peter Donnelly; Jeremy K Nicholson; Maxine Allen; Krina T Zondervan; John C Lindon; Tim D Spector; Mark I McCarthy; Elaine Holmes; Dorrit Baunsgaard; Chris C Holmes
Journal:  Mol Syst Biol       Date:  2011-08-30       Impact factor: 11.429

7.  Metabotyping of long-lived mice using 1H NMR spectroscopy.

Authors:  Anisha Wijeyesekera; Colin Selman; Richard H Barton; Elaine Holmes; Jeremy K Nicholson; Dominic J Withers
Journal:  J Proteome Res       Date:  2012-02-27       Impact factor: 4.466

Review 8.  Two dimensional NMR spectroscopic approaches for exploring plant metabolome: A review.

Authors:  Engy A Mahrous; Mohamed A Farag
Journal:  J Adv Res       Date:  2014-10-18       Impact factor: 10.479

9.  Does centrifugation matter? Centrifugal force and spinning time alter the plasma metabolome.

Authors:  Dorothea Lesche; Roland Geyer; Daniel Lienhard; Christos T Nakas; Gaëlle Diserens; Peter Vermathen; Alexander B Leichtle
Journal:  Metabolomics       Date:  2016-09-15       Impact factor: 4.290

Review 10.  Nuclear Magnetic Resonance technique in tumor metabolism.

Authors:  Ting Li; Pengchi Deng
Journal:  Genes Dis       Date:  2016-12-13
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