Literature DB >> 26526515

Quantification of 1H NMR Spectra from Human Plasma.

Robin A de Graaf1, Hetty Prinsen1, Cosimo Giannini2, Sonia Caprio3, Raimund I Herzog4.   

Abstract

Human plasma is a biofluid that is high in information content, making it an excellent candidate for metabolomic studies. 1H NMR has been a popular technique to detect several dozen metabolites in blood plasma. In order for 1H NMR to become an automated, high-throughput method, challenges related to (1) the large signal from lipoproteins and (2) spectral overlap between different metabolites have to be addressed. Here diffusion-weighted 1H NMR is used to separate lipoprotein and metabolite signals based on their large difference in translational diffusion. The metabolite 1H NMR spectrum is then quantified through spectral fitting utilizing full prior knowledge on the metabolite spectral signatures. Extension of the scan time by 3 minutes or 15% per sample allowed the acquisition of a 1H NMR spectrum with high diffusion weighting. The metabolite 1H NMR spectra could reliably be modeled with 28 metabolites. Excellent correlation was found between results obtained with diffusion NMR and ultrafiltration. The combination of minimal sample preparation together with minimal user interaction during processing and quantification provides a metabolomics technique for automated, quantitative 1H NMR of human plasma.

Entities:  

Keywords:  1H NMR; Human plasma; diffusion; lipoproteins; spectral quantification

Year:  2015        PMID: 26526515      PMCID: PMC4624446          DOI: 10.1007/s11306-015-0828-1

Source DB:  PubMed          Journal:  Metabolomics        ISSN: 1573-3882            Impact factor:   4.290


  11 in total

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Authors:  Robin A de Graaf; Kevin L Behar
Journal:  Anal Chem       Date:  2003-05-01       Impact factor: 6.986

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Authors:  J D Otvos; E J Jeyarajah; D W Bennett
Journal:  Clin Chem       Date:  1991-03       Impact factor: 8.327

3.  1H NMR-based absolute quantitation of human lipoproteins and their lipid contents directly from plasma.

Authors:  M Ala-Korpela; A Korhonen; J Keisala; S Hörkkö; P Korpi; L P Ingman; J Jokisaari; M J Savolainen; Y A Kesäniemi
Journal:  J Lipid Res       Date:  1994-12       Impact factor: 5.922

4.  High-resolution 1H-NMR spectroscopy of blood plasma for metabolic studies.

Authors:  R A Wevers; U Engelke; A Heerschap
Journal:  Clin Chem       Date:  1994-07       Impact factor: 8.327

5.  Circulating levels of FGF-21 in obese youth: associations with liver fat content and markers of liver damage.

Authors:  Cosimo Giannini; Ariel E Feldstein; Nicola Santoro; Grace Kim; Romy Kursawe; Bridget Pierpont; Sonia Caprio
Journal:  J Clin Endocrinol Metab       Date:  2013-04-26       Impact factor: 5.958

6.  Quantification of high-resolution (1)H NMR spectra from rat brain extracts.

Authors:  Robin A de Graaf; Golam M I Chowdhury; Kevin L Behar
Journal:  Anal Chem       Date:  2010-12-13       Impact factor: 6.986

7.  Estimation of metabolite concentrations from localized in vivo proton NMR spectra.

Authors:  S W Provencher
Journal:  Magn Reson Med       Date:  1993-12       Impact factor: 4.668

8.  Quantitative 1H-magnetic resonance spectroscopy of human brain: Influence of composition and parameterization of the basis set in linear combination model-fitting.

Authors:  L Hofmann; J Slotboom; B Jung; P Maloca; C Boesch; R Kreis
Journal:  Magn Reson Med       Date:  2002-09       Impact factor: 4.668

9.  The human serum metabolome.

Authors:  Nikolaos Psychogios; David D Hau; Jun Peng; An Chi Guo; Rupasri Mandal; Souhaila Bouatra; Igor Sinelnikov; Ramanarayan Krishnamurthy; Roman Eisner; Bijaya Gautam; Nelson Young; Jianguo Xia; Craig Knox; Edison Dong; Paul Huang; Zsuzsanna Hollander; Theresa L Pedersen; Steven R Smith; Fiona Bamforth; Russ Greiner; Bruce McManus; John W Newman; Theodore Goodfriend; David S Wishart
Journal:  PLoS One       Date:  2011-02-16       Impact factor: 3.240

10.  Quantitating metabolites in protein precipitated serum using NMR spectroscopy.

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  Anal Chem       Date:  2014-05-14       Impact factor: 6.986

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  11 in total

1.  Reproducibility measurement of glutathione, GABA, and glutamate: Towards in vivo neurochemical profiling of multiple sclerosis with MR spectroscopy at 7T.

Authors:  Hetty Prinsen; Robin A de Graaf; Graeme F Mason; Daniel Pelletier; Christoph Juchem
Journal:  J Magn Reson Imaging       Date:  2016-06-28       Impact factor: 4.813

Review 2.  Recent Advances in NMR-Based Metabolomics.

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  Anal Chem       Date:  2016-12-02       Impact factor: 6.986

3.  Evaluation of sample preparation protocols for quantitative NMR-based metabolomics.

Authors:  Olga A Snytnikova; Anastasiya A Khlichkina; Renad Z Sagdeev; Yuri P Tsentalovich
Journal:  Metabolomics       Date:  2019-05-24       Impact factor: 4.290

4.  Elevated α-Hydroxybutyrate and Branched-Chain Amino Acid Levels Predict Deterioration of Glycemic Control in Adolescents.

Authors:  Domenico Tricò; Hetty Prinsen; Cosimo Giannini; Robin de Graaf; Christoph Juchem; Fangyong Li; Sonia Caprio; Nicola Santoro; Raimund I Herzog
Journal:  J Clin Endocrinol Metab       Date:  2017-07-01       Impact factor: 5.958

5.  A novel method of sample homogenization with the use of a microtome-cryostat apparatus.

Authors:  Ekaterina A Zelentsova; Vadim V Yanshole; Yuri P Tsentalovich
Journal:  RSC Adv       Date:  2019-11-20       Impact factor: 4.036

6.  A comparison of high-throughput plasma NMR protocols for comparative untargeted metabolomics.

Authors:  Nikolaos G Bliziotis; Udo F H Engelke; Ruud L E G Aspers; Jasper Engel; Jaap Deinum; Henri J L M Timmers; Ron A Wevers; Leo A J Kluijtmans
Journal:  Metabolomics       Date:  2020-05-01       Impact factor: 4.290

7.  MEGA-PRESS of GABA+: Influences of acquisition parameters.

Authors:  Dinesh K Deelchand; Małgorzata Marjańska; Pierre-Gilles Henry; Melissa Terpstra
Journal:  NMR Biomed       Date:  2019-10-28       Impact factor: 4.044

8.  Evaluation of sample preparation methods for NMR-based metabolomics of cow milk.

Authors:  Bénédict Yanibada; Hamid Boudra; Laurent Debrauwer; Cécile Martin; Diego P Morgavi; Cécile Canlet
Journal:  Heliyon       Date:  2018-10-19

9.  Inhibition of enteric methanogenesis in dairy cows induces changes in plasma metabolome highlighting metabolic shifts and potential markers of emission.

Authors:  Bénédict Yanibada; Ulli Hohenester; Mélanie Pétéra; Cécile Canlet; Stéphanie Durand; Fabien Jourdan; Julien Boccard; Cécile Martin; Maguy Eugène; Diego P Morgavi; Hamid Boudra
Journal:  Sci Rep       Date:  2020-09-24       Impact factor: 4.379

Review 10.  Quantitative NMR-Based Biomedical Metabolomics: Current Status and Applications.

Authors:  Alexandra A Crook; Robert Powers
Journal:  Molecules       Date:  2020-11-04       Impact factor: 4.927

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