Literature DB >> 8816489

Induction of DNA replication by transcription in the region upstream of the human c-myc gene in a model replication system.

R Ohba1, K Matsumoto, Y Ishimi.   

Abstract

An important relationship between transcription and initiation of DNA replication in both eukaryotes and prokaryotes has been suggested. In an attempt to understand the molecular mechanism of this interaction, we examined whether transcription can induce DNA replication in vitro by constructing a system in which both replication and transcription were combined. Relaxed circular DNA possessing a replication initiation zone located upstream of the human c-myc gene and a T7 promoter near the P1 promoter of the gene was replicated in the presence of T7 RNA polymerase. In our model system, replication was carried out with the proteins required for simian virus 40 DNA replication. DNA synthesis, which was dependent on both T7 RNA polymerase and the replication proteins, was detected mainly in the promoter and upstream regions of the c-myc gene. Blocking RNA synthesis at the initial stage of the reaction severely reduced DNA synthesis, suggesting that RNA chain elongation is required to induce DNA synthesis. The results indicated that transcription can induce DNA replication in the upstream region of the transcribed gene, most likely by introducing negative supercoiling into the region, which results in unwinding of the DNA duplex.

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Year:  1996        PMID: 8816489      PMCID: PMC231576          DOI: 10.1128/MCB.16.10.5754

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  53 in total

Review 1.  Prokaryotic DNA replication.

Authors:  K J Marians
Journal:  Annu Rev Biochem       Date:  1992       Impact factor: 23.643

Review 2.  Eukaryotic replication origins.

Authors:  P G Held; N H Heintz
Journal:  Biochim Biophys Acta       Date:  1992-04-06

3.  DNA helical stability accounts for mutational defects in a yeast replication origin.

Authors:  D A Natale; A E Schubert; D Kowalski
Journal:  Proc Natl Acad Sci U S A       Date:  1992-04-01       Impact factor: 11.205

4.  Replication of the simian virus 40 chromosome with purified proteins.

Authors:  Y Ishimi; K Sugasawa; F Hanaoka; A Kikuchi
Journal:  J Biol Chem       Date:  1991-08-25       Impact factor: 5.157

5.  ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex.

Authors:  S P Bell; B Stillman
Journal:  Nature       Date:  1992-05-14       Impact factor: 49.962

6.  Transcription-driven site-specific DNA recombination in vitro.

Authors:  P Dröge
Journal:  Proc Natl Acad Sci U S A       Date:  1993-04-01       Impact factor: 11.205

7.  Mapping of a Physarum chromosomal origin of replication tightly linked to a developmentally-regulated profilin gene.

Authors:  M Bénard; G Pierron
Journal:  Nucleic Acids Res       Date:  1992-07-11       Impact factor: 16.971

8.  A human DNA replication origin: localization and transcriptional characterization.

Authors:  G Biamonti; G Perini; F Weighardt; S Riva; M Giacca; P Norio; L Zentilin; S Diviacco; D Dimitrova; A Falaschi
Journal:  Chromosoma       Date:  1992       Impact factor: 4.316

9.  Specific transcription factors stimulate simian virus 40 and polyomavirus origins of DNA replication.

Authors:  Z S Guo; M L DePamphilis
Journal:  Mol Cell Biol       Date:  1992-06       Impact factor: 4.272

10.  The AT richness and gid transcription determine the left border of the replication origin of the E. coli chromosome.

Authors:  T Asai; M Takanami; M Imai
Journal:  EMBO J       Date:  1990-12       Impact factor: 11.598

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  10 in total

1.  Nuclear organization of DNA replication in primary mammalian cells.

Authors:  B K Kennedy; D A Barbie; M Classon; N Dyson; E Harlow
Journal:  Genes Dev       Date:  2000-11-15       Impact factor: 11.361

2.  Developmental changes in the Sciara II/9A initiation zone for DNA replication.

Authors:  Victoria V Lunyak; Michael Ezrokhi; Heidi S Smith; Susan A Gerbi
Journal:  Mol Cell Biol       Date:  2002-12       Impact factor: 4.272

3.  Transcription factor binding and induced transcription alter chromosomal c-myc replicator activity.

Authors:  M Ghosh; G Liu; G Randall; J Bevington; M Leffak
Journal:  Mol Cell Biol       Date:  2004-12       Impact factor: 4.272

4.  Interference of the simian virus 40 origin of replication by the cytomegalovirus immediate early gene enhancer: evidence for competition of active regulatory chromatin conformation in a single domain.

Authors:  P H Chen; W B Tseng; Y Chu; M T Hsu
Journal:  Mol Cell Biol       Date:  2000-06       Impact factor: 4.272

5.  Recruitment of the putative transcription-repair coupling factor CSB/ERCC6 to RNA polymerase II elongation complexes.

Authors:  D Tantin; A Kansal; M Carey
Journal:  Mol Cell Biol       Date:  1997-12       Impact factor: 4.272

6.  Multiple functional elements comprise a Mammalian chromosomal replicator.

Authors:  Guoqi Liu; Michelle Malott; Michael Leffak
Journal:  Mol Cell Biol       Date:  2003-03       Impact factor: 4.272

7.  The one-kilobase DNA fragment upstream of the ardC actin gene of Physarum polycephalum is both a replicator and a promoter.

Authors:  G Pierron; D Pallotta; M Bénard
Journal:  Mol Cell Biol       Date:  1999-05       Impact factor: 4.272

8.  Specification of regions of DNA replication initiation during embryogenesis in the 65-kilobase DNApolalpha-dE2F locus of Drosophila melanogaster.

Authors:  T Sasaki; T Sawado; M Yamaguchi; T Shinomiya
Journal:  Mol Cell Biol       Date:  1999-01       Impact factor: 4.272

9.  Thymine-rich single-stranded DNA activates Mcm4/6/7 helicase on Y-fork and bubble-like substrates.

Authors:  Zhiying You; Yukio Ishimi; Takeshi Mizuno; Kaoru Sugasawa; Fumio Hanaoka; Hisao Masai
Journal:  EMBO J       Date:  2003-11-17       Impact factor: 11.598

10.  The ribosomal RNA gene promoter and adjacent cis-acting DNA sequences govern plasmid DNA partitioning and stable inheritance in the parasitic protozoan Leishmania.

Authors:  Nathalie Boucher; François McNicoll; Maxime Laverdière; Annie Rochette; Marie-Noëlle Chou; Barbara Papadopoulou
Journal:  Nucleic Acids Res       Date:  2004-05-25       Impact factor: 16.971

  10 in total

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