Literature DB >> 8757291

How proteins recognize the TATA box.

Z S Juo1, T K Chiu, P M Leiberman, I Baikalov, A J Berk, R E Dickerson.   

Abstract

The crystal structure of a complex of human TATA-binding protein with TATA-sequence DNA has been solved, complementing earlier TBP/DNA analyses from Saccharomyces cerevisiae and Arabidopsis thaliana. Special insight into TATA box specificity is provided by considering the TBP/DNA complex, not as a protein molecule with bound DNA, but as a DNA duplex with a particularly large minor groove ligand. This point of view provides explanations for: (1) why T.A base-pairs are required rather than C.G; (2) why an alternation of T and A bases is needed; (3) how TBP recognizes the upstream and downstream ends of the TATA box in order to bind properly; and (4) why the second half of the TATA box can be more variable than the first.

Entities:  

Mesh：

Substances：

Year:  1996        PMID： 8757291     DOI： 10.1006/jmbi.1996.0456

Source DB:  PubMed          Journal:  J Mol Biol        ISSN： 0022-2836            Impact factor:   5.469


  93 in total

1.  Orientation of the transcription preinitiation complex in archaea.

Authors:  S D Bell; P L Kosa; P B Sigler; S P Jackson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium.

Authors:  T Kawashima; N Amano; H Koike; S Makino; S Higuchi; Y Kawashima-Ohya; K Watanabe; M Yamazaki; K Kanehori; T Kawamoto; T Nunoshiba; Y Yamamoto; H Aramaki; K Makino; M Suzuki
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

3.  The structure of a stable intermediate in the A <--> B DNA helix transition.

Authors:  H L Ng; M L Kopka; R E Dickerson
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

4.  Crystal structure of an antiparallel DNA fragment with Hoogsteen base pairing.

Authors:  Nicola G A Abrescia; Andrew Thompson; Tam Huynh-Dinh; Juan A Subirana
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

5.  A single-stranded promoter for RNA polymerase III.

Authors:  Oliver Schroder; E Peter Geiduschek; George A Kassavetis
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-21       Impact factor: 11.205

Review 6.  Computational approaches to identify promoters and cis-regulatory elements in plant genomes.

Authors:  Stephane Rombauts; Kobe Florquin; Magali Lescot; Kathleen Marchal; Pierre Rouzé; Yves van de Peer
Journal:  Plant Physiol       Date:  2003-07       Impact factor: 8.340

7.  Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein.

Authors:  N Pastor; L Pardo; H Weinstein
Journal:  Biophys J       Date:  1997-08       Impact factor: 4.033

8.  Systematic detection of internal symmetry in proteins using CE-Symm.

Authors:  Douglas Myers-Turnbull; Spencer E Bliven; Peter W Rose; Zaid K Aziz; Philippe Youkharibache; Philip E Bourne; Andreas Prlić
Journal:  J Mol Biol       Date:  2014-03-26       Impact factor: 5.469

9.  Functional and structural organization of Brf, the TFIIB-related component of the RNA polymerase III transcription initiation complex.

Authors:  G A Kassavetis; A Kumar; E Ramirez; E P Geiduschek
Journal:  Mol Cell Biol       Date:  1998-09       Impact factor: 4.272

Review 10.  New hopes from old drugs: revisiting DNA-binding small molecules as anticancer agents.

Authors:  Katerina Gurova
Journal:  Future Oncol       Date:  2009-12       Impact factor: 3.404
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.