Literature DB >> 12538860

A single-stranded promoter for RNA polymerase III.

Oliver Schroder1, E Peter Geiduschek, George A Kassavetis.   

Abstract

Single strands of DNA serve, in rare instances, as promoters for transcription; duplex DNA promoters with individual strands that also have a promoter capacityfunction have not been described. We show that the nontranscribed strand of the Saccharomyces cerevisiae U6 snRNA gene directs transcription initiation factor IIIB-requiring and accurately initiating transcription by RNA polymerase III. The nontranscribed strand promoter is much more extended than its duplex DNA counterpart, comprising the U6 gene TATA box, a downstream T(7) tract, and an upstream-lying segment. A requirement for placement of the 3' end of the transcribed (template) strand within the confines of the transcription bubble is seen as indicating that the nontranscribed strand provides a scaffold for RNA polymerase recruitment but is deficient at a subsequent step of transcription initiation factor IIIB's direct involvement in promoter opening.

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Year:  2003        PMID: 12538860      PMCID: PMC298704          DOI: 10.1073/pnas.242735699

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Alignment of the B" subunit of RNA polymerase III transcription factor IIIB in its promoter complex.

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Journal:  J Biol Chem       Date:  1999-10-01       Impact factor: 5.157

2.  RNA-Dependent replication and transcription of hepatitis delta virus RNA involve distinct cellular RNA polymerases.

Authors:  L E Modahl; T B Macnaughton; N Zhu; D L Johnson; M M Lai
Journal:  Mol Cell Biol       Date:  2000-08       Impact factor: 4.272

3.  TFIIIC-independent in vitro transcription of yeast tRNA genes.

Authors:  G Dieci; R Percudani; S Giuliodori; L Bottarelli; S Ottonello
Journal:  J Mol Biol       Date:  2000-06-09       Impact factor: 5.469

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Authors:  A A Sokolenko; I I Sandomirskii; L K Savinkova
Journal:  Mol Biol (Mosk)       Date:  1996 Mar-Apr

5.  On the evolution of the single-subunit RNA polymerases.

Authors:  N Cermakian; T M Ikeda; P Miramontes; B F Lang; M W Gray; R Cedergren
Journal:  J Mol Evol       Date:  1997-12       Impact factor: 2.395

6.  Frpo: a novel single-stranded DNA promoter for transcription and for primer RNA synthesis of DNA replication.

Authors:  H Masai; K Arai
Journal:  Cell       Date:  1997-06-13       Impact factor: 41.582

7.  Functional dissection of the B" component of RNA polymerase III transcription factor IIIB: a scaffolding protein with multiple roles in assembly and initiation of transcription.

Authors:  A Kumar; G A Kassavetis; E P Geiduschek; M Hambalko; C J Brent
Journal:  Mol Cell Biol       Date:  1997-04       Impact factor: 4.272

8.  Architecture of protein and DNA contacts within the TFIIIB-DNA complex.

Authors:  T Colbert; S Lee; G Schimmack; S Hahn
Journal:  Mol Cell Biol       Date:  1998-03       Impact factor: 4.272

9.  Minus-strand origin of filamentous phage versus transcriptional promoters in recognition of RNA polymerase.

Authors:  A Higashitani; N Higashitani; K Horiuchi
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-01       Impact factor: 11.205

10.  A post-recruitment function for the RNA polymerase III transcription-initiation factor IIIB.

Authors:  G A Kassavetis; A Kumar; G A Letts; E P Geiduschek
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

View more
  6 in total

1.  A critical role of downstream RNA polymerase-promoter interactions in the formation of initiation complex.

Authors:  Vladimir Mekler; Leonid Minakhin; Konstantin Severinov
Journal:  J Biol Chem       Date:  2011-04-27       Impact factor: 5.157

2.  Coupling of downstream RNA polymerase-promoter interactions with formation of catalytically competent transcription initiation complex.

Authors:  Vladimir Mekler; Leonid Minakhin; Sergei Borukhov; Arkady Mustaev; Konstantin Severinov
Journal:  J Mol Biol       Date:  2014-10-13       Impact factor: 5.469

3.  Bacteriophage N4 virion RNA polymerase interaction with its promoter DNA hairpin.

Authors:  Elena K Davydova; Thomas J Santangelo; Lucia B Rothman-Denes
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-16       Impact factor: 11.205

4.  Starting and stopping RNA polymerase III transcription on single-stranded DNA oligonucleotides.

Authors:  Lodoe Lama; Kevin Ryan
Journal:  RNA       Date:  2022-07-19       Impact factor: 5.636

5.  Human U2 snRNA genes exhibit a persistently open transcriptional state and promoter disassembly at metaphase.

Authors:  Thomas Pavelitz; Arnold D Bailey; Christopher P Elco; Alan M Weiner
Journal:  Mol Cell Biol       Date:  2008-03-31       Impact factor: 4.272

Review 6.  RNA polymerase III and antiviral innate immune response.

Authors:  Nayef Jarrous; Alexander Rouvinski
Journal:  Transcription       Date:  2021-02-24
  6 in total

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