Literature DB >> 8710845

A designed beta-hairpin peptide in crystals.

I L Karle1, S K Awasthi, P Balaram.   

Abstract

Beta-hairpin structures have been crystallographically characterized only in very short acyclic peptides, in contrast to helices. The structure of the designed beta-hairpin, t-butoxycarbonyl-Leu-Val-Val-D-Pro-Gly-Leu-Val-Val-OMe in crystals is described. The two independent molecules of the octapeptide fold into almost ideal beta-hairpin conformations with the central D-Pro-Gly segment adopting a Type II' beta-turn conformation. The definitive characterization of a beta-hairpin has implications for de novo peptide and protein design, particularly for the development of three- and four-stranded beta-sheets.

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Year:  1996        PMID: 8710845      PMCID: PMC38644          DOI: 10.1073/pnas.93.16.8189

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Four classes of beta-hairpins in proteins.

Authors:  E J Milner-White; R Poet
Journal:  Biochem J       Date:  1986-11-15       Impact factor: 3.857

2.  A short linear peptide derived from the N-terminal sequence of ubiquitin folds into a water-stable non-native beta-hairpin.

Authors:  M S Searle; D H Williams; L C Packman
Journal:  Nat Struct Biol       Date:  1995-11

3.  Competing interactions contributing to alpha-helical stability in aqueous solution.

Authors:  M J Bodkin; J M Goodfellow
Journal:  Protein Sci       Date:  1995-04       Impact factor: 6.725

4.  Strategies and rationales for the de novo design of a helical hairpin peptide.

Authors:  Y Fezoui; D L Weaver; J J Osterhout
Journal:  Protein Sci       Date:  1995-02       Impact factor: 6.725

5.  A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

Authors:  C K Smith; J M Withka; L Regan
Journal:  Biochemistry       Date:  1994-05-10       Impact factor: 3.162

6.  Engineering of betabellin 14D: disulfide-induced folding of a beta-sheet protein.

Authors:  Y Yan; B W Erickson
Journal:  Protein Sci       Date:  1994-07       Impact factor: 6.725

7.  Ferrichrome-A tetrahydrate. Determination of crystal and molecular structure.

Authors:  A Zalkin; J D Forrester; D H Templeton
Journal:  J Am Chem Soc       Date:  1966-04-20       Impact factor: 15.419

8.  Crystal structure of [Leu1]zervamicin, a membrane ion-channel peptide: implications for gating mechanisms.

Authors:  I L Karle; J L Flippen-Anderson; S Agarwalla; P Balaram
Journal:  Proc Natl Acad Sci U S A       Date:  1991-06-15       Impact factor: 11.205

9.  Facile transition between 3(10)- and alpha-helix: structures of 8-, 9-, and 10-residue peptides containing the -(Leu-Aib-Ala)2-Phe-Aib- fragment.

Authors:  I L Karle; J L Flippen-Anderson; R Gurunath; P Balaram
Journal:  Protein Sci       Date:  1994-09       Impact factor: 6.725

10.  Structure of octreotide, a somatostatin analogue.

Authors:  E Pohl; A Heine; G M Sheldrick; Z Dauter; K S Wilson; J Kallen; W Huber; P J Pfäffli
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1995-01-01
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  26 in total

1.  De novo design and characterization of an apolar helical hairpin peptide at atomic resolution: Compaction mediated by weak interactions.

Authors:  U A Ramagopal; S Ramakumar; D Sahal; V S Chauhan
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Length-dependent stability and strand length limits in antiparallel beta -sheet secondary structure.

Authors:  H E Stanger; F A Syud; J F Espinosa; I Giriat; T Muir; S H Gellman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-02       Impact factor: 11.205

3.  Chemical shifts provide fold populations and register of beta hairpins and beta sheets.

Authors:  R Matthew Fesinmeyer; F Michael Hudson; Katherine A Olsen; George W N White; Anna Euser; Niels H Andersen
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

Review 4.  Expanding the polypeptide backbone: hydrogen-bonded conformations in hybrid polypeptides containing the higher homologues of alpha-amino acids.

Authors:  Sunanda Chatterjee; Rituparna Sinha Roy; P Balaram
Journal:  J R Soc Interface       Date:  2007-08-22       Impact factor: 4.118

5.  Parameterization and Analysis of Peptide-Based Catalysts for the Atroposelective Bromination of 3-Arylquinazolin-4(3H)-ones.

Authors:  Jennifer M Crawford; Elizabeth A Stone; Anthony J Metrano; Scott J Miller; Matthew S Sigman
Journal:  J Am Chem Soc       Date:  2018-01-10       Impact factor: 15.419

6.  Density functional theory study of β-hairpins in antiparallel β-sheets, a new classification based upon H-bond topology.

Authors:  Dipankar Roy; Gabor Pohl; Jorge Ali-Torres; Mateusz Marianski; J J Dannenberg
Journal:  Biochemistry       Date:  2012-06-27       Impact factor: 3.162

7.  Backbone Engineering within a Latent β-Hairpin Structure to Design Inhibitors of Polyglutamine Amyloid Formation.

Authors:  Karunakar Kar; Matthew A Baker; George A Lengyel; Cody L Hoop; Ravindra Kodali; In-Ja Byeon; W Seth Horne; Patrick C A van der Wel; Ronald Wetzel
Journal:  J Mol Biol       Date:  2016-12-13       Impact factor: 5.469

8.  Infinite pleated beta -sheet formed by the beta-hairpin Boc-beta-Phe-beta-Phe-D-Pro-Gly-beta-Phe-beta-Phe-OMe.

Authors:  Isabella Karle; Hosahudya N Gopi; Padmanabhan Balaram
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

9.  Evaluation of β-Amino Acid Replacements in Protein Loops: Effects on Conformational Stability and Structure.

Authors:  David E Mortenson; Dale F Kreitler; Nicole C Thomas; Ilia A Guzei; Samuel H Gellman; Katrina T Forest
Journal:  Chembiochem       Date:  2018-02-13       Impact factor: 3.164

10.  X-ray crystallographic structure of an artificial beta-sheet dimer.

Authors:  Omid Khakshoor; Aaron J Lin; Tyler P Korman; Michael R Sawaya; Shiou-Chuan Tsai; David Eisenberg; James S Nowick
Journal:  J Am Chem Soc       Date:  2010-08-25       Impact factor: 15.419

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