Literature DB >> 8703081

Exploring phenotype space through neutral evolution.

M A Huynen1.   

Abstract

RNA secondary-structure folding algorithms predict the existence of connected networks of RNA sequences with identical secondary structures. Fitness landscapes that are based on the mapping between RNA sequence and RNA secondary structure hence have many neutral paths. A neutral walk on these fitness landscapes gives access to a virtually unlimited number of secondary structures that are a single point mutation from the neutral path. This shows that neutral evolution explores phenotype space and can play a role in adaptation.

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Year:  1996        PMID: 8703081     DOI: 10.1007/BF02338823

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  9 in total

1.  From sequences to shapes and back: a case study in RNA secondary structures.

Authors:  P Schuster; W Fontana; P F Stadler; I L Hofacker
Journal:  Proc Biol Sci       Date:  1994-03-22       Impact factor: 5.349

2.  Multiple coding and the evolutionary properties of RNA secondary structure.

Authors:  M A Huynen; D A Konings; P Hogeweg
Journal:  J Theor Biol       Date:  1993-11-21       Impact factor: 2.691

3.  Statistics of RNA secondary structures.

Authors:  W Fontana; D A Konings; P F Stadler; P Schuster
Journal:  Biopolymers       Date:  1993-09       Impact factor: 2.505

4.  Base pairing probabilities in a complete HIV-1 RNA.

Authors:  M A Huynen; A Perelson; W A Vieira; P F Stadler
Journal:  J Comput Biol       Date:  1996       Impact factor: 1.479

5.  Pattern analysis of RNA secondary structure similarity and consensus of minimal-energy folding.

Authors:  D A Konings; P Hogeweg
Journal:  J Mol Biol       Date:  1989-06-05       Impact factor: 5.469

6.  Natural selection and the concept of a protein space.

Authors:  J M Smith
Journal:  Nature       Date:  1970-02-07       Impact factor: 49.962

7.  Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.

Authors:  M Zuker; P Stiegler
Journal:  Nucleic Acids Res       Date:  1981-01-10       Impact factor: 16.971

8.  Structurally complex and highly active RNA ligases derived from random RNA sequences.

Authors:  E H Ekland; J W Szostak; D P Bartel
Journal:  Science       Date:  1995-07-21       Impact factor: 47.728

9.  Smoothness within ruggedness: the role of neutrality in adaptation.

Authors:  M A Huynen; P F Stadler; W Fontana
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

  9 in total
  44 in total

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Journal:  Genetics       Date:  2000-11       Impact factor: 4.562

2.  Evolution of aptamers with a new specificity and new secondary structures from an ATP aptamer.

Authors:  Zhen Huang; Jack W Szostak
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

3.  "Hypothesis for the modern RNA world": a pervasive non-coding RNA-based genetic regulation is a prerequisite for the emergence of multicellular complexity.

Authors:  Irma Lozada-Chávez; Peter F Stadler; Sonja J Prohaska
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5.  How evolution guides complexity.

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Journal:  HFSP J       Date:  2009-10-19

6.  The evolvability of programmable hardware.

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7.  Robustness versus evolvability: a paradigm revisited.

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Journal:  HFSP J       Date:  2010-05-07

Review 8.  Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life.

Authors:  Nobuto Takeuchi; Paulien Hogeweg
Journal:  Phys Life Rev       Date:  2012-06-13       Impact factor: 11.025

9.  Modular evolution and increase of functional complexity in replicating RNA molecules.

Authors:  Susanna C Manrubia; Carlos Briones
Journal:  RNA       Date:  2006-11-14       Impact factor: 4.942

10.  Emerging Frontiers in the Study of Molecular Evolution.

Authors:  David A Liberles; Belinda Chang; Kerry Geiler-Samerotte; Aaron Goldman; Jody Hey; Betül Kaçar; Michelle Meyer; William Murphy; David Posada; Andrew Storfer
Journal:  J Mol Evol       Date:  2020-04       Impact factor: 2.395

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