Literature DB >> 8692953

Selection for genes encoding secreted proteins and receptors.

R D Klein1, Q Gu, A Goddard, A Rosenthal.   

Abstract

Extracellular proteins play an essential role in the formation, differentiation, and maintenance of multicellular organisms. Despite that, the systematic identification of genes encoding these proteins has not been possible. We describe here a highly efficient method to isolate genes encoding secreted and membrane-bound proteins by using a single-step selection in yeast. Application of this method, termed signal peptide selection, to various tissues yielded 559 clones that appear to encode known or novel extracellular proteins. These include members of the transforming growth factor and epidermal growth factor protein families, endocrine hormones, tyrosine kinase receptors, serine/threonine kinase receptors, seven transmembrane receptors, cell adhesion molecules, extracellular matrix proteins, plasma proteins, and ion channels. The eventual identification of most, or all, extracellular signaling molecules will advance our understanding of fundamental biological processes and our ability to intervene in disease states.

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Year:  1996        PMID: 8692953      PMCID: PMC38944          DOI: 10.1073/pnas.93.14.7108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

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Authors:  G von Heijne
Journal:  Nucleic Acids Res       Date:  1986-06-11       Impact factor: 16.971

Review 2.  Notch signaling.

Authors:  S Artavanis-Tsakonas; K Matsuno; M E Fortini
Journal:  Science       Date:  1995-04-14       Impact factor: 47.728

Review 3.  Towards a genetic basis for kidney development.

Authors:  J B Bard; J E McConnell; J A Davies
Journal:  Mech Dev       Date:  1994-10       Impact factor: 1.882

4.  Signal sequence trap: a cloning strategy for secreted proteins and type I membrane proteins.

Authors:  K Tashiro; H Tada; R Heilker; M Shirozu; T Nakano; T Honjo
Journal:  Science       Date:  1993-07-30       Impact factor: 47.728

Review 5.  Receptor protein-tyrosine kinases and their signal transduction pathways.

Authors:  P van der Geer; T Hunter; R A Lindberg
Journal:  Annu Rev Cell Biol       Date:  1994

6.  Signal sequences. The limits of variation.

Authors:  G von Heijne
Journal:  J Mol Biol       Date:  1985-07-05       Impact factor: 5.469

7.  Secretion-defective mutations in the signal sequence for Saccharomyces cerevisiae invertase.

Authors:  C A Kaiser; D Botstein
Journal:  Mol Cell Biol       Date:  1986-07       Impact factor: 4.272

8.  Many random sequences functionally replace the secretion signal sequence of yeast invertase.

Authors:  C A Kaiser; D Preuss; P Grisafi; D Botstein
Journal:  Science       Date:  1987-01-16       Impact factor: 47.728

9.  Two differentially regulated mRNAs with different 5' ends encode secreted with intracellular forms of yeast invertase.

Authors:  M Carlson; D Botstein
Journal:  Cell       Date:  1982-01       Impact factor: 41.582

10.  A new type of transforming growth factor-beta, TGF-beta 3.

Authors:  R Derynck; P B Lindquist; A Lee; D Wen; J Tamm; J L Graycar; L Rhee; A J Mason; D A Miller; R J Coffey
Journal:  EMBO J       Date:  1988-12-01       Impact factor: 11.598

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  33 in total

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Authors:  M Péterfy; T Gyuris; L Takács
Journal:  Nucleic Acids Res       Date:  2000-04-01       Impact factor: 16.971

2.  A multitude of genes expressed solely in meiotic or postmeiotic spermatogenic cells offers a myriad of contraceptive targets.

Authors:  Nikolaus Schultz; F Kent Hamra; David L Garbers
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-02       Impact factor: 11.205

3.  Engineered viruses to select genes encoding secreted and membrane-bound proteins in mammalian cells.

Authors:  Pierre Moffatt; Patrick Salois; Marie-Hélène Gaumond; Natalie St-Amant; Eric Godin; Christian Lanctôt
Journal:  Nucleic Acids Res       Date:  2002-10-01       Impact factor: 16.971

4.  The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment.

Authors:  Hilary F Clark; Austin L Gurney; Evangeline Abaya; Kevin Baker; Daryl Baldwin; Jennifer Brush; Jian Chen; Bernard Chow; Clarissa Chui; Craig Crowley; Bridget Currell; Bethanne Deuel; Patrick Dowd; Dan Eaton; Jessica Foster; Christopher Grimaldi; Qimin Gu; Philip E Hass; Sherry Heldens; Arthur Huang; Hok Seon Kim; Laura Klimowski; Yisheng Jin; Stephanie Johnson; James Lee; Lhney Lewis; Dongzhou Liao; Melanie Mark; Edward Robbie; Celina Sanchez; Jill Schoenfeld; Somasekar Seshagiri; Laura Simmons; Jennifer Singh; Victoria Smith; Jeremy Stinson; Alicia Vagts; Richard Vandlen; Colin Watanabe; David Wieand; Kathryn Woods; Ming-Hong Xie; Daniel Yansura; Sothy Yi; Guoying Yu; Jean Yuan; Min Zhang; Zemin Zhang; Audrey Goddard; William I Wood; Paul Godowski; Alane Gray
Journal:  Genome Res       Date:  2003-09-15       Impact factor: 9.043

5.  A H2O2-producing glyoxal oxidase is required for filamentous growth and pathogenicity in Ustilago maydis.

Authors:  B Leuthner; C Aichinger; E Oehmen; E Koopmann; O Müller; P Müller; R Kahmann; M Bölker; P H Schreier
Journal:  Mol Genet Genomics       Date:  2004-12-01       Impact factor: 3.291

6.  A signal peptide secretion screen in Fucus distichus embryos reveals expression of glucanase, EGF domain-containing, and LRR receptor kinase-like polypeptides during asymmetric cell growth.

Authors:  Kenneth D Belanger; Aaron J Wyman; Michelle N Sudol; Sneh L Singla-Pareek; Ralph S Quatrano
Journal:  Planta       Date:  2003-06-27       Impact factor: 4.116

7.  EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen Phytophthora.

Authors:  Trudy A Torto; Shuang Li; Allison Styer; Edgar Huitema; Antonino Testa; Neil A R Gow; Pieter van West; Sophien Kamoun
Journal:  Genome Res       Date:  2003-07       Impact factor: 9.043

8.  Plasmopara viticola effector PvRXLR53 suppresses innate immunity in Nicotiana benthamiana.

Authors:  Jiaqi Liu; Shuyun Chen; Tao Ma; Yu Gao; Shiren Song; Wenxiu Ye; Jiang Lu
Journal:  Plant Signal Behav       Date:  2020-11-19

9.  Vasorin, a transforming growth factor beta-binding protein expressed in vascular smooth muscle cells, modulates the arterial response to injury in vivo.

Authors:  Yuichi Ikeda; Yasushi Imai; Hidetoshi Kumagai; Tetsuya Nosaka; Yoshihiro Morikawa; Tomoko Hisaoka; Ichiro Manabe; Koji Maemura; Takashi Nakaoka; Takeshi Imamura; Kohei Miyazono; Issei Komuro; Ryozo Nagai; Toshio Kitamura
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-09       Impact factor: 11.205

10.  E. coli selection of human genes encoding secreted and membrane proteins based on cDNA fusions to a leaderless beta-lactamase reporter.

Authors:  Ruoying Tan; Xin Jiang; Alan Jackson; Pei Jin; Junming Yang; Ernestine Lee; Brendan Duggan; Laura L Stuve; Glenn K Fu
Journal:  Genome Res       Date:  2003-07-17       Impact factor: 9.043

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