Literature DB >> 8679624

Allosteric intermediates in hemoglobin. 1. Nanosecond time-resolved circular dichroism spectroscopy.

S C Björling1, R A Goldbeck, S J Paquette, S J Milder, D S Kliger.   

Abstract

Time-resolved circular dichroism (TRCD) studies performed on photolyzed hemoglobin-CO complex (HbCO) probe room temperature protein relaxations in Hb, including the R --> T allosteric transition. TRCD spectroscopy of photolysis intermediates in the near-UV (250-400 nm) spectral region provides a diagnostic for T-like structure at the alpha 1 beta 2 interface via the effect of quaternary structure on the UV CD of aromatic residues. The TRCD of porphyrin-based transitions in the UV and Soret regions, reflecting transition-dipole couplings between hemes and aromatic residues over a radius wide enough to permit heme-interface and inter-dimer interactions, is modulated by the tertiary and quaternary structure of photolysis intermediates. In the allosteric core model of Hb cooperativity, Fe-CO bond breakage initiates a heme structural change, thought to be heme doming, that is transmitted to the alpha 1 beta 2 interface via the F helix. The TRCD results, analyzed in light of kinetic information from time-resolved absorption studies, suggest specific features for the mechanism by which the ensuing tertiary and quaternary conformational changes propagate through the protein. In particular, the UV-TRCD indicates that the alpha 1 beta 2 interface responds within several hundred nanoseconds to initial events at the heme by shifting from an R toward a T-like interface. The appearance of T-like character at the alpha 1 beta 2 interface tens of microseconds before the appearance of equilibrated T state deoxyHb indicates that the R --> T transition in photolyzed HbCO is a stepwise process, as previously suggested by time-resolved resonance Raman studies.

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Year:  1996        PMID: 8679624     DOI: 10.1021/bi952247s

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  Multiple geminate ligand recombinations in human hemoglobin.

Authors:  R M Esquerra; R A Goldbeck; S H Reaney; A M Batchelder; Y Wen; J W Lewis; D S Kliger
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

2.  Molecular dynamics of human methemoglobin: the transmission of conformational information between subunits in an alpha beta dimer.

Authors:  N Ramadas; J M Rifkind
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

3.  Single residue modification of only one dimer within the hemoglobin tetramer reveals autonomous dimer function.

Authors:  Gary K Ackers; Paula M Dalessio; George H Lew; Margaret A Daugherty; Jo M Holt
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-15       Impact factor: 11.205

4.  Circular dichroism spectroscopy of tertiary and quaternary conformations of human hemoglobin entrapped in wet silica gels.

Authors:  Luca Ronda; Stefano Bruno; Cristiano Viappiani; Stefania Abbruzzetti; Andrea Mozzarelli; Kenneth C Lowe; Stefano Bettati
Journal:  Protein Sci       Date:  2006-07-05       Impact factor: 6.725

5.  Role of Heme Pocket Water in Allosteric Regulation of Ligand Reactivity in Human Hemoglobin.

Authors:  Raymond M Esquerra; Bushra M Bibi; Pooncharas Tipgunlakant; Ivan Birukou; Jayashree Soman; John S Olson; David S Kliger; Robert A Goldbeck
Journal:  Biochemistry       Date:  2016-07-13       Impact factor: 3.162

6.  Nanosecond time-resolved polarization spectroscopies: tools for probing protein reaction mechanisms.

Authors:  Eefei Chen; Robert A Goldbeck; David S Kliger
Journal:  Methods       Date:  2010-05-11       Impact factor: 3.608

7.  Dominance of misfolded intermediates in the dynamics of α-helix folding.

Authors:  Milo M Lin; Dmitry Shorokhov; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-22       Impact factor: 11.205

8.  The effect of water on the rate of conformational change in protein allostery.

Authors:  R A Goldbeck; S J Paquette; D S Kliger
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

9.  Dynamics of Quaternary Structure Transitions in R-State Carbonmonoxyhemoglobin Unveiled in Time-Resolved X-ray Scattering Patterns Following a Temperature Jump.

Authors:  Hyun Sun Cho; Friedrich Schotte; Valentyn Stadnytskyi; Anthony DiChiara; Robert Henning; Philip Anfinrud
Journal:  J Phys Chem B       Date:  2018-10-16       Impact factor: 2.991

10.  Spontaneous quaternary and tertiary T-R transitions of human hemoglobin in molecular dynamics simulation.

Authors:  Jochen S Hub; Marcus B Kubitzki; Bert L de Groot
Journal:  PLoS Comput Biol       Date:  2010-05-06       Impact factor: 4.475

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