Literature DB >> 11606302

The effect of water on the rate of conformational change in protein allostery.

R A Goldbeck1, S J Paquette, D S Kliger.   

Abstract

The influence of solvation on the rate of quaternary structural change is investigated in human hemoglobin, an allosteric protein in which reduced water activity destabilizes the R state relative to T. Nanosecond absorption spectroscopy of the heme Soret band was used to monitor protein relaxation after photodissociation of aqueous HbCO complex under osmotic stress induced by the nonbinding cosolute poly(ethylene glycol) (PEG). Photolysis data were analyzed globally for six exponential time constants and amplitudes as a function of osmotic stress and viscosity. Increases in time constants associated with geminate rebinding, tertiary relaxation, and quaternary relaxation were observed in the presence of PEG, along with a decrease in the fraction of hemes rebinding CO with the slow rate constant characteristic of the T state. An analysis of these results along with those obtained by others for small cosolutes showed that both osmotic stress and solvent viscosity are important determinants of the microscopic R --> T rate constant. The size and direction of the osmotic stress effect suggests that at least nine additional water molecules are required to solvate the allosteric transition state relative to the R-state hydration, implying that the transition state has a greater solvent-exposed area than either end state.

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Year:  2001        PMID: 11606302      PMCID: PMC1301756          DOI: 10.1016/S0006-3495(01)75932-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

1.  Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives.

Authors:  V A Parsegian; R P Rand; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

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Authors:  R M Esquerra; R A Goldbeck; S H Reaney; A M Batchelder; Y Wen; J W Lewis; D S Kliger
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

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Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

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Authors:  E W Findsen; J M Friedman; M R Ondrias
Journal:  Biochemistry       Date:  1988-11-29       Impact factor: 3.162

Review 5.  Time-resolved optical spectroscopy and structural dynamics following photodissociation of carbonmonoxyhemoglobin.

Authors:  L P Murray; J Hofrichter; E R Henry; W A Eaton
Journal:  Biophys Chem       Date:  1988-02       Impact factor: 2.352

6.  Hemoglobin allostery: resonance Raman spectroscopy of kinetic intermediates.

Authors:  V Jayaraman; K R Rodgers; I Mukerji; T G Spiro
Journal:  Science       Date:  1995-09-29       Impact factor: 47.728

7.  Transient Raman study of CO-haemoprotein photolysis: origin of the quantum yield.

Authors:  J M Friedman; K B Lyons
Journal:  Nature       Date:  1980-04-10       Impact factor: 49.962

8.  Stabilization of protein structure by sugars.

Authors:  T Arakawa; S N Timasheff
Journal:  Biochemistry       Date:  1982-12-07       Impact factor: 3.162

9.  Vapor pressure osmometry studies of osmolyte-protein interactions: implications for the action of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro.

Authors:  E S Courtenay; M W Capp; C F Anderson; M T Record
Journal:  Biochemistry       Date:  2000-04-18       Impact factor: 3.162

10.  Viscosity dependence of O2 escape from respiratory proteins as a function of cosolvent molecular weight.

Authors:  S Yedgar; C Tetreau; B Gavish; D Lavalette
Journal:  Biophys J       Date:  1995-02       Impact factor: 4.033

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  7 in total

1.  The role of hydration on the mechanism of allosteric regulation: in situ measurements of the oxygen-linked kinetics of water binding to hemoglobin.

Authors:  Andrés G Salvay; J Raúl Grigera; Marcio F Colombo
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

2.  Liquid-liquid phase separation in hemoglobins: distinct aggregation mechanisms of the beta6 mutants.

Authors:  Qiuying Chen; Peter G Vekilov; Ronald L Nagel; Rhoda Elison Hirsch
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

3.  Differential influence of dynamic processes on forward and reverse electron transfer across a protein-protein interface.

Authors:  Brian M Hoffman; Laura M Celis; Deborah A Cull; Ami D Patel; Jennifer L Seifert; Korin E Wheeler; Jingyun Wang; Jiang Yao; Igor V Kurnikov; Judith M Nocek
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

4.  Endonuclease-like activity of heme proteins.

Authors:  Willy B Tan; Wunhuey Cheng; Andrew Webber; Akhilesh Bhambhani; Michael R Duff; Challa V Kumar; George L McLendon
Journal:  J Biol Inorg Chem       Date:  2005-11-08       Impact factor: 3.358

5.  Role of Heme Pocket Water in Allosteric Regulation of Ligand Reactivity in Human Hemoglobin.

Authors:  Raymond M Esquerra; Bushra M Bibi; Pooncharas Tipgunlakant; Ivan Birukou; Jayashree Soman; John S Olson; David S Kliger; Robert A Goldbeck
Journal:  Biochemistry       Date:  2016-07-13       Impact factor: 3.162

6.  Influence of the water structure on the acetylcholinesterase efficiency.

Authors:  Angela S F Ramos; Simone Techert
Journal:  Biophys J       Date:  2005-07-01       Impact factor: 4.033

7.  Characterization of the purified hyaluronan synthase from Streptococcus equisimilis.

Authors:  Valarie L Tlapak-Simmons; Christina A Baron; Paul H Weigel
Journal:  Biochemistry       Date:  2004-07-20       Impact factor: 3.162

  7 in total

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