Literature DB >> 8649985

Lack of biological significance in the 'linguistic features' of noncoding DNA--a quantitative analysis.

C A Chatzidimitriou-Dreismann1, R M Streffer, D Larhammar.   

Abstract

Recently, the application of two statistical methods (related to Zipf's distribution and Shannon's redundancy), called 'linguistic' tests, to the primary structure of DNA sequences of living organisms has excited considerable interest. Of particular importance is the claim that noncoding DNA sequences in eukaryotes display specific 'linguistic' features, being reminiscent of natural languages. Furthermore, this implies that noncoding regions of DNA may carry some new, thus far unknown, biological information which is revealed by these tests. In this paper these claims are tested quantitatively. With the aid of computer simulations of natural DNA sequences, and by applying the same 'linguistic' tests to both natural and artificial sequences, we investigate in detail the reasons of the appearance of the claimed 'linguistic' features and the associated differences between coding and noncoding DNAs. The presented results show quantitatively that the 'linguistic' tests failed to reveal any new biological information in (noncoding or coding) DNA.

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Year:  1996        PMID: 8649985      PMCID: PMC145855          DOI: 10.1093/nar/24.9.1676

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  9 in total

1.  Linguistic features of noncoding DNA sequences.

Authors:  R N Mantegna; S V Buldyrev; A L Goldberger; S Havlin; C K Peng; M Simons; H E Stanley
Journal:  Phys Rev Lett       Date:  1994-12-05       Impact factor: 9.161

2.  Pseudorandom number generator for massively parallel molecular-dynamics simulations.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1994-08

3.  Noncoding DNA, Zipf's law, and language.

Authors:  A K Konopka; C Martindale
Journal:  Science       Date:  1995-05-12       Impact factor: 47.728

4.  Patchiness and correlations in DNA sequences.

Authors:  S Karlin; V Brendel
Journal:  Science       Date:  1993-01-29       Impact factor: 47.728

5.  Biological origins of long-range correlations and compositional variations in DNA.

Authors:  D Larhammar; C A Chatzidimitriou-Dreismann
Journal:  Nucleic Acids Res       Date:  1993-11-11       Impact factor: 16.971

6.  Explaining "linguistic features" of noncoding DNA.

Authors:  S Bonhoeffer; A V Herz; M C Boerlijst; S Nee; M A Nowak; R M May
Journal:  Science       Date:  1996-01-05       Impact factor: 47.728

7.  A quantitative test of long-range correlations and compositional fluctuations in DNA sequences.

Authors:  C A Chatzidimitriou-Dreismann; R M Streffer; D Larhammar
Journal:  Eur J Biochem       Date:  1994-09-01

8.  Variations in base pair composition and associated long-range correlations in DNA sequences--computer simulation results.

Authors:  C A Chatzidimitriou-Dreismann; R M Streffer; D Larhammar
Journal:  Biochim Biophys Acta       Date:  1994-03-01

9.  Hints of a language in junk DNA.

Authors:  F Flam
Journal:  Science       Date:  1994-11-25       Impact factor: 47.728

  9 in total
  4 in total

Review 1.  Genomics, morphogenesis and biophysics: triangulation of Purkinje cell development.

Authors:  Malcolm J Simons; András J Pellionisz
Journal:  Cerebellum       Date:  2006       Impact factor: 3.648

2.  A comparative study and a phylogenetic exploration of the compositional architectures of mammalian nuclear genomes.

Authors:  Eran Elhaik; Dan Graur
Journal:  PLoS Comput Biol       Date:  2014-11-06       Impact factor: 4.475

3.  Evolutionary dynamics of selfish DNA explains the abundance distribution of genomic subsequences.

Authors:  Michael Sheinman; Anna Ramisch; Florian Massip; Peter F Arndt
Journal:  Sci Rep       Date:  2016-08-04       Impact factor: 4.379

4.  Peptide vocabulary analysis reveals ultra-conservation and homonymity in protein sequences.

Authors:  Derek Gatherer
Journal:  Bioinform Biol Insights       Date:  2009-11-24
  4 in total

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