Literature DB >> 7925349

A quantitative test of long-range correlations and compositional fluctuations in DNA sequences.

C A Chatzidimitriou-Dreismann1, R M Streffer, D Larhammar.   

Abstract

Recent findings concerning long-range correlations and fractals in intron-containing DNA sequences of living organisms are tested qualitatively and quantitatively. Extending previous studies, we demonstrate that these findings are trivially equivalent to variations of the base-pair composition in different regions of a DNA sequence. It is shown explicitly that a well-defined scaling or fractal exponent does not exist anywhere. Comparisons of natural DNAs with computer-generated, artificial sequences are made. The present study reveals that certain natural DNA sequences (especially those with compact genomes) do have stochastic characteristics which are intrinsically different from artificial sequences. The results for 21 DNA sequences of various types from widely different taxa are reported.

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Year:  1994        PMID: 7925349     DOI: 10.1111/j.1432-1033.1994.00365.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  2 in total

1.  Lack of biological significance in the 'linguistic features' of noncoding DNA--a quantitative analysis.

Authors:  C A Chatzidimitriou-Dreismann; R M Streffer; D Larhammar
Journal:  Nucleic Acids Res       Date:  1996-05-01       Impact factor: 16.971

2.  Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats.

Authors:  Vladimir Paar; Nenad Pavin; Ivan Basar; Marija Rosandić; Matko Gluncić; Nils Paar
Journal:  BMC Bioinformatics       Date:  2008-11-03       Impact factor: 3.169

  2 in total

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