Literature DB >> 8430316

Patchiness and correlations in DNA sequences.

S Karlin1, V Brendel.   

Abstract

The highly nonrandom character of genomic DNA can confound attempts at modeling DNA sequence variation by standard stochastic processes (including random walk or fractal models). In particular, the mosaic character of DNA consisting of patches of different composition can fully account for apparent long-range correlations in DNA.

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Year:  1993        PMID： 8430316     DOI： 10.1126/science.8430316

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


  21 in total

1.  Formation and positioning of nucleosomes: effect of sequence-dependent long-range correlated structural disorder.

Authors:  C Vaillant; B Audit; C Thermes; A Arnéodo
Journal:  Eur Phys J E Soft Matter       Date:  2006-02-14       Impact factor: 1.890

2.  Lack of biological significance in the 'linguistic features' of noncoding DNA--a quantitative analysis.

Authors:  C A Chatzidimitriou-Dreismann; R M Streffer; D Larhammar
Journal:  Nucleic Acids Res       Date:  1996-05-01       Impact factor: 16.971

3.  Over- and underrepresentation of short DNA words in herpesvirus genomes.

Authors:  M Y Leung; G M Marsh; T P Speed
Journal:  J Comput Biol       Date:  1996       Impact factor: 1.479

4.  Quantification of DNA patchiness using long-range correlation measures.

Authors:  G M Viswanathan; S V Buldyrev; S Havlin; H E Stanley
Journal:  Biophys J       Date:  1997-02       Impact factor: 4.033

5.  A computational genomics approach to the identification of gene networks.

Authors:  A Wagner
Journal:  Nucleic Acids Res       Date:  1997-09-15       Impact factor: 16.971

6.  Characteristic enrichment of DNA repeats in different genomes.

Authors:  R Cox; S M Mirkin
Journal:  Proc Natl Acad Sci U S A       Date:  1997-05-13       Impact factor: 11.205

7.  Searching for repeats, as an example of using the generalised Ruzzo-Tompa algorithm to find optimal subsequences with gaps.

Authors:  John L Spouge; Leonardo Mariño-Ramírez; Sergey L Sheetlin
Journal:  Int J Bioinform Res Appl       Date:  2014

8.  Wavelet Analysis of DNA Bending Profiles reveals Structural Constraints on the Evolution of Genomic Sequences.

Authors:  Benjamin Audit; Cédric Vaillant; Alain Arnéodo; Yves d'Aubenton-Carafa; Claude Thermes
Journal:  J Biol Phys       Date:  2004-03       Impact factor: 1.365

9.  U-richness is a defining feature of plant introns and may function as an intron recognition signal in maize.

Authors:  C H Ko; V Brendel; R D Taylor; V Walbot
Journal:  Plant Mol Biol       Date:  1998-03       Impact factor: 4.076

10.  Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats.

Authors:  Vladimir Paar; Nenad Pavin; Ivan Basar; Marija Rosandić; Matko Gluncić; Nils Paar
Journal:  BMC Bioinformatics       Date:  2008-11-03       Impact factor: 3.169
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