Literature DB >> 8639512

Beta-secondary and solvent deuterium kinetic isotope effects on beta-lactamase catalysis.

S A Adediran1, S A Deraniyagala, Y Xu, R F Pratt.   

Abstract

Beta-Secondary and solvent deuterium kinetic isotope effects have been determined for the steady-state kinetic parameters V/K and V for turnover of a depsipeptide substrate, m-[[(phenylacetyl)glycyl]-oxy]benzoic acid, and of a beta-lactam substrate, penicillanic acid, by three typical class A beta-lactamases and a class C beta-lactamase. The isotope effects on alkaline hydrolysis of these substrates have been used as a frame of reference. The effect of the transition state conformation of the substrates in determining the beta-secondary isotope effects has been explicitly considered. The inverse beta-secondary isotope effects on both V/K and V for the class A enzymes with both substrates indicate transition states where the carbonyl group of the scissile bond has become tetrahedral and therefore reflect typical acyl-transfer transition states. The solvent isotope effects indicate that enzyme deacylation (as reflected in V for the Staphylococcus aureus PC1 beta-lactamase) may be a classical general-base-catalyzed hydrolysis but that there is little proton motion in the enzyme acylation transition state (as revealed by V/K) for the TEM beta-lactamase and Bacillus cereus beta-lactamase I. These results provide kinetic support for the conjecture made on structural grounds that class A beta-lactamases employ an asymmetric double-displacement mechanism. The isotope effects on V/K for the class C beta-lactamase of Enterobacter cloacae P99 suggest an acyl-transfer transition state for the penicillin, although, as for the class A enzymes, without significant proton motion. On the other hand, the V/K transition state for depsipeptide does not seem to involve covalent chemistry. Suggestive of this conclusion are the measured beta-secondary isotope effect of 1,002 +/- 0.012 and the inverse solvent isotope effect. These results provide an example of a significant difference between the kinetics of turnover of a beta-lactam and a depsipeptide by a beta-lactamase. The V transition state for both substrates with the P99 beta-lactamase probably involves acyl-transfer (deacylation) where the conformation of the acyl-enzyme is closely restricted. The conformations of acyl-enzymes of the PC1 and P99 beta-lactamases correlate to the (different) dispositions of general base catalysts at their active sites.

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Year:  1996        PMID: 8639512     DOI: 10.1021/bi952107i

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  11 in total

1.  Antibacterial properties and atomic resolution X-ray complex crystal structure of a ruthenocene conjugated β-lactam antibiotic.

Authors:  Eric M Lewandowski; Joanna Skiba; Nicholas J Torelli; Aleksandra Rajnisz; Jolanta Solecka; Konrad Kowalski; Yu Chen
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2.  Deacylation transition states of a bacterial DD-peptidase.

Authors:  S A Adediran; I Kumar; R F Pratt
Journal:  Biochemistry       Date:  2006-10-31       Impact factor: 3.162

3.  Mechanisms of proton relay and product release by Class A β-lactamase at ultrahigh resolution.

Authors:  Eric M Lewandowski; Kathryn G Lethbridge; Ruslan Sanishvili; Joanna Skiba; Konrad Kowalski; Yu Chen
Journal:  FEBS J       Date:  2017-11-20       Impact factor: 5.542

4.  Effects of high pressure on solvent isotope effects of yeast alcohol dehydrogenase.

Authors:  D B Northrop; Y K Cho
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

5.  Substituted aryl malonamates as new serine beta-lactamase substrates: structure-activity studies.

Authors:  S A Adediran; D Cabaret; J-F Lohier; M Wakselman; R F Pratt
Journal:  Bioorg Med Chem       Date:  2009-10-31       Impact factor: 3.641

6.  Kinetic characterization of hydrolysis of nitrocefin, cefoxitin, and meropenem by β-lactamase from Mycobacterium tuberculosis.

Authors:  Carmen Chow; Hua Xu; John S Blanchard
Journal:  Biochemistry       Date:  2013-05-30       Impact factor: 3.162

7.  Ligand-Induced Proton Transfer and Low-Barrier Hydrogen Bond Revealed by X-ray Crystallography.

Authors:  Derek A Nichols; Jacqueline C Hargis; Ruslan Sanishvili; Priyadarshini Jaishankar; Kyle Defrees; Emmanuel W Smith; Kenneth K Wang; Fabio Prati; Adam R Renslo; H Lee Woodcock; Yu Chen
Journal:  J Am Chem Soc       Date:  2015-06-22       Impact factor: 15.419

8.  Reclaiming the efficacy of β-lactam-β-lactamase inhibitor combinations: avibactam restores the susceptibility of CMY-2-producing Escherichia coli to ceftazidime.

Authors:  Krisztina M Papp-Wallace; Marisa L Winkler; Julian A Gatta; Magdalena A Taracila; Sujatha Chilakala; Yan Xu; J Kristie Johnson; Robert A Bonomo
Journal:  Antimicrob Agents Chemother       Date:  2014-05-12       Impact factor: 5.191

9.  Detection of an enzyme isomechanism by means of the kinetics of covalent inhibition.

Authors:  S A Adediran; Michael J Morrison; R F Pratt
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2021-06-02       Impact factor: 4.125

Review 10.  Inverse Solvent Isotope Effects in Enzyme-Catalyzed Reactions.

Authors:  Patrick L Fernandez; Andrew S Murkin
Journal:  Molecules       Date:  2020-04-21       Impact factor: 4.411

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