Literature DB >> 8628212

Organization of the histone H3 genes in soybean, barley and wheat.

V Kanazin1, T Blake, R C Shoemaker.   

Abstract

Several variants of the replacement histone H3 genes from soybean, barley and wheat have been cloned and sequenced. Analysis of segregating populations in barley and soybean, as well as analysis of clones isolated from a soybean genomic library, suggested that these genes are dispersed throughout the genome. Several genes contains introns located in similar positions, but of different lengths and sequence. Comparison of mRNA levels in different tissues revealed that the intron-containing and intronless genes have different expression patterns. The distribution of the introns in the histone H3 genes across several plant species suggests that some of the introns might have been lost during the evolution of the gene family. Sequence divergence among introns and gene-flanking sequences in cloned gene variants allowed us to use them as specific probes for localizing individual gene copies and analyzing the genomic distribution of these variants across a range of genotypes.

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Year:  1996        PMID： 8628212     DOI： 10.1007/bf02174172

Source DB:  PubMed          Journal:  Mol Gen Genet        ISSN： 0026-8925


  42 in total

Review 1.  Intron phylogeny: a new hypothesis.

Authors:  T Cavalier-Smith
Journal:  Trends Genet       Date:  1991-05       Impact factor: 11.639

2.  Conservation of intron position indicates separation of major and variant H2As is an early event in the evolution of eukaryotes.

Authors:  A van Daal; E M White; S C Elgin; M A Gorovsky
Journal:  J Mol Evol       Date:  1990-05       Impact factor: 2.395

3.  Subfamilies of histone H3 and H4 genes are located on most, possibly all of the chromosomes in maize.

Authors:  N Chaubet; G Philipps; C Gigot; C Guitton; N Bouvet; G Freyssinet; M Schneerman; D E Weber
Journal:  Theor Appl Genet       Date:  1992-08       Impact factor: 5.699

4.  Genes encoding a histone H3.3-like variant in Arabidopsis contain intervening sequences.

Authors:  N Chaubet; B Clement; C Gigot
Journal:  J Mol Biol       Date:  1992-05-20       Impact factor: 5.469

5.  Codon usage in histone gene families of higher eukaryotes reflects functional rather than phylogenetic relationships.

Authors:  D Wells; W Bains; L Kedes
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

6.  Splice junctions, branch point sites, and exons: sequence statistics, identification, and applications to genome project.

Authors:  P Senapathy; M B Shapiro; N L Harris
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

7.  Cell-cycle regulation of histone gene expression.

Authors:  D Schümperli
Journal:  Cell       Date:  1986-05-23       Impact factor: 41.582

8.  Structure of a human histone cDNA: evidence that basally expressed histone genes have intervening sequences and encode polyadenylylated mRNAs.

Authors:  D Wells; L Kedes
Journal:  Proc Natl Acad Sci U S A       Date:  1985-05       Impact factor: 11.205

9.  The En/Spm transposable element of Zea mays contains splice sites at the termini generating a novel intron from a dSpm element in the A2 gene.

Authors:  A Menssen; S Höhmann; W Martin; P S Schnable; P A Peterson; H Saedler; A Gierl
Journal:  EMBO J       Date:  1990-10       Impact factor: 11.598

10.  A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome.

Authors:  A Kleinhofs; A Kilian; M A Saghai Maroof; R M Biyashev; P Hayes; F Q Chen; N Lapitan; A Fenwick; T K Blake; V Kanazin; E Ananiev; L Dahleen; D Kudrna; J Bollinger; S J Knapp; B Liu; M Sorrells; M Heun; J D Franckowiak; D Hoffman; R Skadsen; B J Steffenson
Journal:  Theor Appl Genet       Date:  1993-07       Impact factor: 5.699
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  8 in total

1.  Tissue-dependent enhancement of transgene expression by introns of replacement histone H3 genes of Arabidopsis.

Authors:  N Chaubet-Gigot; T Kapros; M Flenet; K Kahn; C Gigot; J H Waterborg
Journal:  Plant Mol Biol       Date:  2001-01       Impact factor: 4.076

Review 2.  Regulation of histone gene expression during the cell cycle.

Authors:  T Meshi; K I Taoka; M Iwabuchi
Journal:  Plant Mol Biol       Date:  2000-08       Impact factor: 4.076

3.  Maize histone H2B-mCherry: a new fluorescent chromatin marker for somatic and meiotic chromosome research.

Authors:  Elizabeth S Howe; Thomas E Clemente; Hank W Bass
Journal:  DNA Cell Biol       Date:  2012-06-04       Impact factor: 3.311

4.  Constitutive expression exposes functional redundancy between the Arabidopsis histone H2A gene HTA1 and other H2A gene family members.

Authors:  HoChul Yi; Nagesh Sardesai; Toshinori Fujinuma; Chien-Wei Chan; Stanton B Gelvin
Journal:  Plant Cell       Date:  2006-06-02       Impact factor: 11.277

5.  Differential expression of Histone H3 gene in tea (Camellia sinensis (L.) O. Kuntze) suggests its role in growing tissue.

Authors:  Kashmir Singh; Sanjay Kumar; Paramvir Singh Ahuja
Journal:  Mol Biol Rep       Date:  2008-01-26       Impact factor: 2.316

6.  Structural characteristics of two wheat histone H2A genes encoding distinct types of variants and functional differences in their promoter activity.

Authors:  G H Huh; T Nakayama; T Meshi; M Iwabuchi
Journal:  Plant Mol Biol       Date:  1997-03       Impact factor: 4.076

7.  Origins, colonization, and lineage recombination in a widespread perennial soybean polyploid complex.

Authors:  J J Doyle; J L Doyle; A H Brown
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

Review 8.  Optimization of Genome Knock-In Method: Search for the Most Efficient Genome Regions for Transgene Expression in Plants.

Authors:  Sergey M Rozov; Natalya V Permyakova; Yuriy V Sidorchuk; Elena V Deineko
Journal:  Int J Mol Sci       Date:  2022-04-16       Impact factor: 6.208
  8 in total

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