Literature DB >> 8604330

Extensive RNA editing of U to C in addition to C to U substitution in the rbcL transcripts of hornwort chloroplasts and the origin of RNA editing in green plants.

K Yoshinaga1, H Iinuma, T Masuzawa, K Uedal.   

Abstract

We cloned and sequenced a portion of chloroplast DNA from the hornwort Anthoceros formosae. A nucleotide sequence of 7556 bp contained structures similar to those of ndhK, ndhC, trnV, trnM, atpE, atpB, rbcL, trnR and accD. The arrangement of these was the same as that of other chloroplast DNA. However, two nonsense codons were located within the putative coding region of rbcL, although they were used as putative termination codons of the genes. RNA was extensively edited in the transcripts of rbcL when cDNA sequences were analyzed. The unusual nonsense codons of TGA and TAA became CGA and CAA respectively. These are examples of U to C type RNA editing, which was never been found before in chloroplast mRNA. In general, 13 Cs of genomic DNA were found as Ts in the cDNA sequence and seven Ts were found as Cs. This is the first finding of RNA editing on the transcripts of rbcL and also in bryophytes. This event had been thought to arise in land plants after the split of bryophytes. The origin of RNA editing is discussed in relation to the landing of green plants.

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Year:  1996        PMID: 8604330      PMCID: PMC145765          DOI: 10.1093/nar/24.6.1008

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  28 in total

1.  Identification of editing positions in the ndhB transcript from maize chloroplasts reveals sequence similarities between editing sites of chloroplasts and plant mitochondria.

Authors:  R M Maier; K Neckermann; B Hoch; N B Akhmedov; H Kössel
Journal:  Nucleic Acids Res       Date:  1992-12-11       Impact factor: 16.971

2.  The psbL gene from bell pepper (Capsicum annuum): plastid RNA editing also occurs in non-photosynthetic chromoplasts.

Authors:  M Kuntz; B Camara; J H Weil; R Schantz
Journal:  Plant Mol Biol       Date:  1992-12       Impact factor: 4.076

3.  RNA editing in plant mitochondria.

Authors:  P S Covello; M W Gray
Journal:  Nature       Date:  1989-10-19       Impact factor: 49.962

4.  RNA editing in plant mitochondria.

Authors:  R Hiesel; B Wissinger; W Schuster; A Brennicke
Journal:  Science       Date:  1989-12-22       Impact factor: 47.728

Review 5.  RNA editing gives a new meaning to the genetic information in mitochondria and chloroplasts.

Authors:  D Pring; A Brennicke; W Schuster
Journal:  Plant Mol Biol       Date:  1993-03       Impact factor: 4.076

6.  The role of RNA editing in conservation of start codons in chloroplast genomes.

Authors:  K Neckermann; P Zeltz; G L Igloi; H Kössel; R M Maier
Journal:  Gene       Date:  1994-09-02       Impact factor: 3.688

7.  Rice chloroplast DNA molecules are heterogeneous as revealed by DNA sequences of a cluster of genes.

Authors:  E Moon; T H Kao; R Wu
Journal:  Nucleic Acids Res       Date:  1987-01-26       Impact factor: 16.971

8.  A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine.

Authors:  L M Powell; S C Wallis; R J Pease; Y H Edwards; T J Knott; J Scott
Journal:  Cell       Date:  1987-09-11       Impact factor: 41.582

9.  Nucleotide sequence of atpB, rbcL, trnR, dedB and psaI chloroplast genes from a fern Angiopteris lygodiifolia: a possible emergence of Spermatophyta lineage before the separation of Bryophyta and Pteridophyta.

Authors:  K Yoshinaga; Y Kubota; T Ishii; K Wada
Journal:  Plant Mol Biol       Date:  1992-01       Impact factor: 4.076

10.  Editing of the chloroplast rpoB transcript is independent of chloroplast translation and shows different patterns in barley and maize.

Authors:  P Zeltz; W R Hess; K Neckermann; T Börner; H Kössel
Journal:  EMBO J       Date:  1993-11       Impact factor: 11.598

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  36 in total

1.  Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: development of a chloroplast in vitro RNA editing system.

Authors:  T Hirose; M Sugiura
Journal:  EMBO J       Date:  2001-03-01       Impact factor: 11.598

2.  A putative RNA editing from U to C in a mouse mitochondrial transcript.

Authors:  Jaime Villegas; Ilse Müller; Jacob Arredondo; Rodrigo Pinto; Luis O Burzio
Journal:  Nucleic Acids Res       Date:  2002-05-01       Impact factor: 16.971

3.  Transcript abundance supercedes editing efficiency as a factor in developmental variation of chloroplast gene expression.

Authors:  Nemo M Peeters; Maureen R Hanson
Journal:  RNA       Date:  2002-04       Impact factor: 4.942

4.  RNA editing in hornwort chloroplasts makes more than half the genes functional.

Authors:  Masanori Kugita; Yuhei Yamamoto; Takeshi Fujikawa; Tohoru Matsumoto; Koichi Yoshinaga
Journal:  Nucleic Acids Res       Date:  2003-05-01       Impact factor: 16.971

5.  Recognition of RNA editing sites is directed by unique proteins in chloroplasts: biochemical identification of cis-acting elements and trans-acting factors involved in RNA editing in tobacco and pea chloroplasts.

Authors:  Tetsuya Miyamoto; Junichi Obokata; Masahiro Sugiura
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

6.  Rapid evolution of RNA editing sites in a small non-essential plastid gene.

Authors:  Andreas Fiebig; Sandra Stegemann; Ralph Bock
Journal:  Nucleic Acids Res       Date:  2004-07-07       Impact factor: 16.971

Review 7.  When you can't trust the DNA: RNA editing changes transcript sequences.

Authors:  Volker Knoop
Journal:  Cell Mol Life Sci       Date:  2010-10-12       Impact factor: 9.261

8.  Nuclear DYW-type PPR gene families diversify with increasing RNA editing frequencies in liverwort and moss mitochondria.

Authors:  Mareike Rüdinger; Ute Volkmar; Henning Lenz; Milena Groth-Malonek; Volker Knoop
Journal:  J Mol Evol       Date:  2012-02       Impact factor: 2.395

9.  Faithful editing of a tomato-specific mRNA editing site in transgenic tobacco chloroplasts.

Authors:  Daniel Karcher; Sabine Kahlau; Ralph Bock
Journal:  RNA       Date:  2007-12-07       Impact factor: 4.942

10.  The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants.

Authors:  Monique Turmel; Christian Otis; Claude Lemieux
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-02       Impact factor: 11.205

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