Literature DB >> 8790464

TRANSFAC retrieval program: a network model database of eukaryotic transcription regulating sequences and proteins.

R Knüppel1, P Dietze, W Lehnberg, K Frech, E Wingender.   

Abstract

DNA sequences that are involved in the control of gene expression in eukaryotes have been collected in conjunction with the proteins binding to and acting through them (TRANSFAC data set). To make these data accessible, the TRANSFAC retrieval program (TRP) has been developed as a database management system which is based upon the network model. This database model possesses particular advantages for data management of a complex structure. The aim of TRP is to provide an easily handled statistical basis for a computational approach to transcription control.

Entities:  

Mesh:

Substances:

Year:  1994        PMID: 8790464     DOI: 10.1089/cmb.1994.1.191

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  54 in total

1.  TRANSFAC: an integrated system for gene expression regulation.

Authors:  E Wingender; X Chen; R Hehl; H Karas; I Liebich; V Matys; T Meinhardt; M Prüss; I Reuter; F Schacherer
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  fdrMotif: identifying cis-elements by an EM algorithm coupled with false discovery rate control.

Authors:  Leping Li; Robert L Bass; Yu Liang
Journal:  Bioinformatics       Date:  2008-02-22       Impact factor: 6.937

3.  Oct4/Sox2-regulated miR-302 targets cyclin D1 in human embryonic stem cells.

Authors:  Deborah A Greer Card; Pratibha B Hebbar; Leping Li; Kevin W Trotter; Yoshihiro Komatsu; Yuji Mishina; Trevor K Archer
Journal:  Mol Cell Biol       Date:  2008-08-18       Impact factor: 4.272

4.  Functional analysis of a novel cis-acting regulatory region within the human ankyrin gene (ANK-1) promoter.

Authors:  Karina Laflamme; Ashley N Owen; Emily E Devlin; Mary Q Yang; Clara Wong; Laurie A Steiner; Lisa J Garrett; Laura Elnitski; Patrick G Gallagher; David M Bodine
Journal:  Mol Cell Biol       Date:  2010-05-17       Impact factor: 4.272

5.  TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.

Authors:  E Wingender; A E Kel; O V Kel; H Karas; T Heinemeyer; P Dietze; R Knüppel; A G Romaschenko; N A Kolchanov
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

6.  Transposon mutagenesis identifies genetic drivers of Braf(V600E) melanoma.

Authors:  Michael B Mann; Michael A Black; Devin J Jones; Jerrold M Ward; Christopher Chin Kuan Yew; Justin Y Newberg; Adam J Dupuy; Alistair G Rust; Marcus W Bosenberg; Martin McMahon; Cristin G Print; Neal G Copeland; Nancy A Jenkins
Journal:  Nat Genet       Date:  2015-04-13       Impact factor: 38.330

7.  Contributions of specificity protein-1 and steroidogenic factor 1 to Adcy4 expression in Y1 mouse adrenal cells.

Authors:  Xianliang Rui; Jennivine Tsao; Joshua O Scheys; Gary D Hammer; Bernard P Schimmer
Journal:  Endocrinology       Date:  2008-04-03       Impact factor: 4.736

8.  Repression of Esophageal Neoplasia and Inflammatory Signaling by Anti-miR-31 Delivery In Vivo.

Authors:  Cristian Taccioli; Michela Garofalo; Hongping Chen; Yubao Jiang; Guidantonio Malagoli Tagliazucchi; Gianpiero Di Leva; Hansjuerg Alder; Paolo Fadda; Justin Middleton; Karl J Smalley; Tommaso Selmi; Srivatsava Naidu; John L Farber; Carlo M Croce; Louise Y Fong
Journal:  J Natl Cancer Inst       Date:  2015-08-18       Impact factor: 13.506

9.  Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies.

Authors:  Denitsa Alamanova; Philip Stegmaier; Alexander Kel
Journal:  BMC Bioinformatics       Date:  2010-05-03       Impact factor: 3.169

10.  Genome-wide comparison between IL-17 and combined TNF-alpha/IL-17 induced genes in primary murine hepatocytes.

Authors:  Titus Sparna; Julia Rétey; Kathrin Schmich; Ute Albrecht; Katrin Naumann; Norbert Gretz; Hans-Peter Fischer; Johannes G Bode; Irmgard Merfort
Journal:  BMC Genomics       Date:  2010-04-07       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.