Literature DB >> 12426367

Variation in satellite DNA profiles--causes and effects.

Durdica Ugarković1, Miroslav Plohl.   

Abstract

Heterochromatic regions of the eukaryotic genome harbour DNA sequences that are repeated many times in tandem, collectively known as satellite DNAs. Different satellite sequences co-exist in the genome, thus forming a set called a satellite DNA library. Within a library, satellite DNAs represent independent evolutionary units. Their evolution can be explained as a result of change in two parameters: copy number and nucleotide sequence, both of them ruled by the same mechanisms of concerted evolution. Individual change in either of these two parameters as well as their simultaneous evolution can lead to the genesis of species-specific satellite profiles. In some cases, changes in satellite DNA profiles can be correlated with chromosomal evolution and could possibly influence the evolution of species.

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Year:  2002        PMID: 12426367      PMCID: PMC137204          DOI: 10.1093/emboj/cdf612

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  46 in total

1.  Recurrent amplifications and deletions of satellite DNA accompanied chromosomal diversification in South American tuco-tucos (genus Ctenomys, Rodentia: Octodontidae): a phylogenetic approach.

Authors:  C H Slamovits; J A Cook; E P Lessa; M S Rossi
Journal:  Mol Biol Evol       Date:  2001-09       Impact factor: 16.240

2.  Molecular diversification of tandemly organized DNA sequences and heterochromatic chromosome regions in some Triticeae species.

Authors:  A V Vershinin; E G Alkhimova; J S Heslop-Harrison
Journal:  Chromosome Res       Date:  1996-11       Impact factor: 5.239

3.  Evolution of repeated DNA sequences by unequal crossover.

Authors:  G P Smith
Journal:  Science       Date:  1976-02-13       Impact factor: 47.728

4.  Conservation of satellite DNA in species of the genus Pimelia (Tenebrionidae, Coleoptera).

Authors:  J Pons; B Bruvo; C Juan; E Petitpierre; M Plohl; D Ugarković
Journal:  Gene       Date:  1997-12-31       Impact factor: 3.688

5.  Complex evolution of tandem-repetitive DNA in the Chironomus thummi species group.

Authors:  R Ross; T Hankeln; E R Schmidt
Journal:  J Mol Evol       Date:  1997-03       Impact factor: 2.395

6.  Adaptive evolution of Cid, a centromere-specific histone in Drosophila.

Authors:  H S Malik; S Henikoff
Journal:  Genetics       Date:  2001-03       Impact factor: 4.562

7.  So much "junk" DNA in our genome.

Authors:  S Ohno
Journal:  Brookhaven Symp Biol       Date:  1972

8.  Differential homogenization and amplification of two satellite DNAs in the genus Cucurbita (Cucurbitaceae).

Authors:  K King; J Jobst; V Hemleben
Journal:  J Mol Evol       Date:  1995-12       Impact factor: 2.395

9.  Conserved patterns of bending in satellite and nucleosome positioning DNA.

Authors:  D J Fitzgerald; G L Dryden; E C Bronson; J S Williams; J N Anderson
Journal:  J Biol Chem       Date:  1994-08-19       Impact factor: 5.157

10.  Fractionation and characterization of satellite DNAs of the kangaroo rat (Dipodomys ordii).

Authors:  F T Hatch; J A Mazrimas
Journal:  Nucleic Acids Res       Date:  1974-04       Impact factor: 16.971

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  103 in total

1.  Diverse patterns of the tandem repeats organization in rye chromosomes.

Authors:  Olena G Alkhimova; Nina A Mazurok; Tatyana A Potapova; Suren M Zakian; John S Heslop-Harrison; Alexander V Vershinin
Journal:  Chromosoma       Date:  2004-07-15       Impact factor: 4.316

2.  Amplification, contraction and genomic spread of a satellite DNA family (E180) in Medicago (Fabaceae) and allied genera.

Authors:  Marcela Rosato; José A Galián; Josep A Rosselló
Journal:  Ann Bot       Date:  2011-12-19       Impact factor: 4.357

3.  Concerted evolution of satellite DNA in Sarcocapnos: a matter of time.

Authors:  Miguel A Pérez-Gutiérrez; Víctor N Suárez-Santiago; Inmaculada López-Flores; Ana Teresa Romero; Manuel A Garrido-Ramos
Journal:  Plant Mol Biol       Date:  2011-11-12       Impact factor: 4.076

4.  Unraveling the sequence dynamics of the formation of genus-specific satellite DNAs in the family solanaceae.

Authors:  S-H Jo; H-M Park; S-M Kim; H H Kim; C-G Hur; D Choi
Journal:  Heredity (Edinb)       Date:  2010-11-10       Impact factor: 3.821

5.  The library model for satellite DNA evolution: a case study with the rodents of the genus Ctenomys (Octodontidae) from the Iberá marsh, Argentina.

Authors:  Diego A Caraballo; Pablo M Belluscio; María Susana Rossi
Journal:  Genetica       Date:  2010-11-12       Impact factor: 1.082

6.  Structure and population dynamics of the major satellite DNA in the red flour beetle Tribolium castaneum.

Authors:  Isidoro Feliciello; Gianni Chinali; Durđica Ugarković
Journal:  Genetica       Date:  2011-08-12       Impact factor: 1.082

7.  Evolutionary dynamics of two satellite DNA families in rock lizards of the genus Iberolacerta (Squamata, Lacertidae): different histories but common traits.

Authors:  Verónica Rojo; Andrés Martínez-Lage; Massimo Giovannotti; Ana M González-Tizón; Paola Nisi Cerioni; Vincenzo Caputo Barucchi; Pedro Galán; Ettore Olmo; Horacio Naveira
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

8.  Preservation and high sequence conservation of satellite DNAs suggest functional constraints.

Authors:  Brankica Mravinac; Miroslav Plohl; Durdica Ugarković
Journal:  J Mol Evol       Date:  2005-09-12       Impact factor: 2.395

Review 9.  Functional elements residing within satellite DNAs.

Authors:  Durdica Ugarkovic
Journal:  EMBO Rep       Date:  2005-11       Impact factor: 8.807

10.  Evolution of satellite DNAs in a radiation of endemic Hawaiian spiders: does concerted evolution of highly repetitive sequences reflect evolutionary history?

Authors:  Joan Pons; Rosemary G Gillespie
Journal:  J Mol Evol       Date:  2004-11       Impact factor: 2.395

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