Literature DB >> 8557026

Crystal structure of the flavohemoglobin from Alcaligenes eutrophus at 1.75 A resolution.

U Ermler1, R A Siddiqui, R Cramm, B Friedrich.   

Abstract

The molecular structure of the flavohemoglobin from Alcaligenes eutrophus has been determined to a resolution of 1.75 A and refined to an R-factor of 19.6%. The protein comprises two fused modules: a heme binding module, which belongs to the globin family, and an FAD binding oxidoreductase module, which adopts a fold like ferredoxin reductase. The most striking deviation of the bacterial globin structure from those of other species is the movement of helix E in a way to provide more space in the vicinity of the distal heme binding site. A comparison with other members of the ferredoxin reductase family shows similar tertiary structures for the individual FAD and NAD binding domains but largely different interdomain orientations. The heme and FAD molecules approach each other to a minimal distance of 6.3 A and adopt an interplanar angle of 80 degrees. The electron transfer from FAD to heme occurs in a predominantly polar environment and may occur directly or be mediated by a water molecule.

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Year:  1995        PMID: 8557026      PMCID: PMC394731          DOI: 10.1002/j.1460-2075.1995.tb00297.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  43 in total

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Authors:  H Iwaasa; T Takagi; K Shikama
Journal:  J Mol Biol       Date:  1992-10-05       Impact factor: 5.469

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Authors:  A Warshel; G Naray-Szabo; F Sussman; J K Hwang
Journal:  Biochemistry       Date:  1989-05-02       Impact factor: 3.162

3.  Determinants of a protein fold. Unique features of the globin amino acid sequences.

Authors:  D Bashford; C Chothia; A M Lesk
Journal:  J Mol Biol       Date:  1987-07-05       Impact factor: 5.469

Review 4.  Adventitious variability? The amino acid sequences of nonvertebrate globins.

Authors:  S N Vinogradov; D A Walz; B Pohajdak; L Moens; O H Kapp; T Suzuki; C N Trotman
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5.  Stereochemical criteria for polypeptide and protein chain conformations. 3. Helical and hydrogen-bonded polypeptide chains.

Authors:  G N Ramachandran; C M Venkatachalam; S Krimm
Journal:  Biophys J       Date:  1966-11       Impact factor: 4.033

6.  Glycera dibranchiata hemoglobin. Structure and refinement at 1.5 A resolution.

Authors:  G Arents; W E Love
Journal:  J Mol Biol       Date:  1989-11-05       Impact factor: 5.469

7.  Ferric reductases in Escherichia coli: the contribution of the haemoglobin-like protein.

Authors:  M Eschenbrenner; J Coves; M Fontecave
Journal:  Biochem Biophys Res Commun       Date:  1994-01-14       Impact factor: 3.575

8.  The alpha-helix dipole and the properties of proteins.

Authors:  W G Hol; P T van Duijnen; H J Berendsen
Journal:  Nature       Date:  1978-06-08       Impact factor: 49.962

9.  Phthalate dioxygenase reductase: a modular structure for electron transfer from pyridine nucleotides to [2Fe-2S].

Authors:  C C Correll; C J Batie; D P Ballou; M L Ludwig
Journal:  Science       Date:  1992-12-04       Impact factor: 47.728

10.  How a protein binds B12: A 3.0 A X-ray structure of B12-binding domains of methionine synthase.

Authors:  C L Drennan; S Huang; J T Drummond; R G Matthews; M L Ludwig
Journal:  Science       Date:  1994-12-09       Impact factor: 47.728

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  39 in total

1.  A cooperative oxygen-binding hemoglobin from Mycobacterium tuberculosis.

Authors:  M Couture; S R Yeh; B A Wittenberg; J B Wittenberg; Y Ouellet; D L Rousseau; M Guertin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  A novel two-over-two alpha-helical sandwich fold is characteristic of the truncated hemoglobin family.

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Journal:  EMBO J       Date:  2000-06-01       Impact factor: 11.598

3.  Novel flavohemoglobins of mycobacteria.

Authors:  Sanjay Gupta; Sudesh Pawaria; Changyuan Lu; Syun-Ru Yeh; Kanak L Dikshit
Journal:  IUBMB Life       Date:  2011-04-13       Impact factor: 3.885

4.  Three globin lineages belonging to two structural classes in genomes from the three kingdoms of life.

Authors:  Serge N Vinogradov; David Hoogewijs; Xavier Bailly; Raúl Arredondo-Peter; Michel Guertin; Julian Gough; Sylvia Dewilde; Luc Moens; Jacques R Vanfleteren
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-01       Impact factor: 11.205

Review 5.  Overview of protein structural and functional folds.

Authors:  Peter D Sun; Christine E Foster; Jeffrey C Boyington
Journal:  Curr Protoc Protein Sci       Date:  2004-05

Review 6.  A brief history of hemoglobins: plant, animal, protist, and bacteria.

Authors:  R C Hardison
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-11       Impact factor: 11.205

Review 7.  Biogenesis of respiratory cytochromes in bacteria.

Authors:  L Thöny-Meyer
Journal:  Microbiol Mol Biol Rev       Date:  1997-09       Impact factor: 11.056

8.  Paraquat regulation of hmp (flavohemoglobin) gene expression in Escherichia coli K-12 is SoxRS independent but modulated by sigma S.

Authors:  J Membrillo-Hernández; S O Kim; G M Cook; R K Poole
Journal:  J Bacteriol       Date:  1997-05       Impact factor: 3.490

9.  Nitric oxide dioxygenase: an enzymic function for flavohemoglobin.

Authors:  P R Gardner; A M Gardner; L A Martin; A L Salzman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

10.  Nitrosative stress: metabolic pathway involving the flavohemoglobin.

Authors:  A Hausladen; A J Gow; J S Stamler
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-24       Impact factor: 11.205

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