Literature DB >> 2682654

Structure of a bacterial enzyme regulated by phosphorylation, isocitrate dehydrogenase.

J H Hurley1, P E Thorsness, V Ramalingam, N H Helmers, D E Koshland, R M Stroud.   

Abstract

The structure of isocitrate dehydrogenase [threo-DS-isocitrate: NADP+ oxidoreductase (decarboxylating), EC 1.1.1.42] from Escherichia coli has been solved and refined at 2.5 A resolution and is topologically different from that of any other dehydrogenase. This enzyme, a dimer of identical 416-residue subunits, is inactivated by phosphorylation at Ser-113, which lies at the edge of an interdomain pocket that also contains many residues conserved between isocitrate dehydrogenase and isopropylmalate dehydrogenase. Isocitrate dehydrogenase contains an unusual clasp-like domain in which both polypeptide chains in the dimer interlock. Based on the structure of isocitrate dehydrogenase and conservation with isopropylmalate dehydrogenase, we suggest that the active site lies in an interdomain pocket close to the phosphorylation site.

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Year:  1989        PMID: 2682654      PMCID: PMC298342          DOI: 10.1073/pnas.86.22.8635

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Synthesis of C4-dicarboxylic acids from acetate by a glyoxylate bypass of the tricarboxylic acid cycle.

Authors:  H L KORNBERG; N B MADSEN
Journal:  Biochim Biophys Acta       Date:  1957-06

2.  Crystallization and preliminary X-ray data for 3-isopropylmalate dehydrogenase of Thermus thermophilus.

Authors:  Y Katsube; N Tanaka; A Takenaka; T Yamada; T Oshima
Journal:  J Biochem       Date:  1988-11       Impact factor: 3.387

3.  Diffraction methods for biological macromolecules. Interactive computer graphics: FRODO.

Authors:  T A Jones
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

4.  Inactivation of isocitrate dehydrogenase by phosphorylation is mediated by the negative charge of the phosphate.

Authors:  P E Thorsness; D E Koshland
Journal:  J Biol Chem       Date:  1987-08-05       Impact factor: 5.157

5.  The nucleotide sequence of 3-isopropylmalate dehydrogenase gene from Bacillus subtilis.

Authors:  R Imai; T Sekiguchi; Y Nosoh; K Tsuda
Journal:  Nucleic Acids Res       Date:  1987-06-25       Impact factor: 16.971

Review 6.  Principles that determine the structure of proteins.

Authors:  C Chothia
Journal:  Annu Rev Biochem       Date:  1984       Impact factor: 23.643

Review 7.  The anatomy and taxonomy of protein structure.

Authors:  J S Richardson
Journal:  Adv Protein Chem       Date:  1981

8.  High guanine plus cytosine content in the third letter of codons of an extreme thermophile. DNA sequence of the isopropylmalate dehydrogenase of Thermus thermophilus.

Authors:  Y Kagawa; H Nojima; N Nukiwa; M Ishizuka; T Nakajima; T Yasuhara; T Tanaka; T Oshima
Journal:  J Biol Chem       Date:  1984-03-10       Impact factor: 5.157

9.  Molecular cloning and nucleotide sequence of the 3-isopropylmalate dehydrogenase gene of Candida utilis.

Authors:  K Hamasawa; Y Kobayashi; S Harada; K Yoda; M Yamasaki; G Tamura
Journal:  J Gen Microbiol       Date:  1987-04

10.  The three dimensional structure of sheep liver 6-phosphogluconate dehydrogenase at 2.6 A resolution.

Authors:  M J Adams; I G Archibald; C E Bugg; A Carne; S Gover; J R Helliwell; R W Pickersgill; S W White
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

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  62 in total

1.  Functional prediction: identification of protein orthologs and paralogs.

Authors:  R Chen; S S Jeong
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

2.  Localization of functional domains of the mitogenic toxin of Pasteurella multocida.

Authors:  G D Pullinger; R Sowdhamini; A J Lax
Journal:  Infect Immun       Date:  2001-12       Impact factor: 3.441

3.  A mechanism for the evolution of phosphorylation sites.

Authors:  Samuel M Pearlman; Zach Serber; James E Ferrell
Journal:  Cell       Date:  2011-11-11       Impact factor: 41.582

4.  Structure of the bifunctional isocitrate dehydrogenase kinase/phosphatase.

Authors:  Jimin Zheng; Zongchao Jia
Journal:  Nature       Date:  2010-05-26       Impact factor: 49.962

5.  Cloning, expression, purification, crystallization and preliminary X-ray crystallographic analysis of isocitrate dehydrogenase 2 (Rv0066c) from Mycobacterium tuberculosis.

Authors:  Georgios N Hatzopoulos; Georgia Kefala; Jochen Mueller-Dieckmann
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-11-28

6.  The RpoS-mediated regulation of isocitrate dehydrogenase gene expression in Escherichia coli.

Authors:  Ii Lae Jung; Sung Keun Kim; In Gyu Kim
Journal:  Curr Microbiol       Date:  2005-12-13       Impact factor: 2.188

7.  Gluconeogenic precursor availability regulates flux through the glyoxylate shunt in Pseudomonas aeruginosa.

Authors:  Audrey Crousilles; Stephen K Dolan; Paul Brear; Dimitri Y Chirgadze; Martin Welch
Journal:  J Biol Chem       Date:  2018-07-20       Impact factor: 5.157

8.  Cloning and molecular analysis of two different ILV5 genes from a brewing strain of Saccharomyces cerevisiae.

Authors:  Q Xie; A Jiménez
Journal:  Curr Genet       Date:  1994 Nov-Dec       Impact factor: 3.886

9.  Characterization of a cDNA clone for human NAD(+)-specific isocitrate dehydrogenase alpha-subunit and structural comparison with its isoenzymes from different species.

Authors:  Y O Kim; I U Oh; H S Park; J Jeng; B J Song; T L Huh
Journal:  Biochem J       Date:  1995-05-15       Impact factor: 3.857

10.  Nondecarboxylating and decarboxylating isocitrate dehydrogenases: oxalosuccinate reductase as an ancestral form of isocitrate dehydrogenase.

Authors:  Miho Aoshima; Yasuo Igarashi
Journal:  J Bacteriol       Date:  2008-01-18       Impact factor: 3.490

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