Literature DB >> 8548455

Amino-acid substitutions in a surface turn modulate protein stability.

P F Predki1, V Agrawal, A T Brünger, L Regan.   

Abstract

A surface turn position in a four-helix bundle protein, Rop, was selected to investigate the role of turns in protein structure and stability. Although all twenty amino acids can be substituted at this position to generate a correctly folded protein, they produce an unusually large range of thermodynamic stabilities. Moreover, the majority of substitutions give rise to proteins with enhanced thermal stability compared to that of the wild type. By introducing the same twenty mutations at this position, but in a simplified context, we were able to deconvolute intrinsic preferences from local environmental effects. The intrinsic preferences can be explained on the basis of preferred backbone dihedral angles, but local environmental context can significantly modify these effects.

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Year:  1996        PMID: 8548455     DOI: 10.1038/nsb0196-54

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  25 in total

1.  Synthesis and NMR solution structure of an alpha-helical hairpin stapled with two disulfide bridges.

Authors:  P Barthe; S Rochette; C Vita; C Roumestand
Journal:  Protein Sci       Date:  2000-05       Impact factor: 6.725

2.  Robustness of protein folding kinetics to surface hydrophobic substitutions.

Authors:  H Gu; N Doshi; D E Kim; K T Simons; J V Santiago; S Nauli; D Baker
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

Review 3.  De novo design of helical bundles as models for understanding protein folding and function.

Authors:  R B Hill; D P Raleigh; A Lombardi; W F DeGrado
Journal:  Acc Chem Res       Date:  2000-11       Impact factor: 22.384

4.  Searching sequence space for protein catalysts.

Authors:  S V Taylor; K U Walter; P Kast; D Hilvert
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-04       Impact factor: 11.205

5.  The role of a beta-bulge in the folding of the beta-hairpin structure in ubiquitin.

Authors:  P Y Chen; B G Gopalacushina; C C Yang; S I Chan; P A Evans
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

6.  Amino-acid substitutions at the fully exposed P1 site of bovine pancreatic trypsin inhibitor affect its stability.

Authors:  D Krowarsch; J Otlewski
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

Review 7.  Roles of beta-turns in protein folding: from peptide models to protein engineering.

Authors:  Anna Marie C Marcelino; Lila M Gierasch
Journal:  Biopolymers       Date:  2008-05       Impact factor: 2.505

8.  Increasing protein stability by polar surface residues: domain-wide consequences of interactions within a loop.

Authors:  P R Pokkuluri; R Raffen; L Dieckman; C Boogaard; F J Stevens; M Schiffer
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

9.  What makes a protein a protein? Hydrophobic core designs that specify stability and structural properties.

Authors:  M Munson; S Balasubramanian; K G Fleming; A D Nagi; R O'Brien; J M Sturtevant; L Regan
Journal:  Protein Sci       Date:  1996-08       Impact factor: 6.725

10.  Increasing protein conformational stability by optimizing beta-turn sequence.

Authors:  Saul R Trevino; Stephanie Schaefer; J Martin Scholtz; C Nick Pace
Journal:  J Mol Biol       Date:  2007-08-09       Impact factor: 5.469

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