Literature DB >> 11274462

Amino-acid substitutions at the fully exposed P1 site of bovine pancreatic trypsin inhibitor affect its stability.

D Krowarsch1, J Otlewski.   

Abstract

It is widely accepted that solvent-exposed sites in proteins play only a negligible role in determining protein energetics. In this paper we show that amino acid substitutions at the fully exposed Lys15 in bovine pancreatic trypsin inhibitor (BPTI) influenced the CD- and DSC-monitored stability: The T(den) difference between the least (P1 Trp) and the most stable (P1 His) mutant is 11.2 degrees C at pH 2.0. The DeltaH(den) versus T(den) plot for all the variants at three pH values (2.0, 2.5, 3.0) is linear (DeltaC(p,den) = 0.41 kcal* mole(-1) * K(-1); 1 cal = 4.18 J) leading to a DeltaG(den) difference of 2.1 kcal*mole(-1). Thermal denaturation of the variants monitored by CD signal at pH 2.0 in the presence of 6 M GdmCl again showed differences in their stability, albeit somewhat smaller (DeltaT(den) =7.1 degrees C). Selective reduction of the Cys14-Cys 38 disulfide bond, which is located in the vicinity of the P1 position did not eliminate the stability differences. A correlation analysis of the P1 stability with different properties of amino acids suggests that two mechanisms may be responsible for the observed stability differences: the reverse hydrophobic effect and amino acid propensities to occur in nonoptimal dihedral angles adopted by the P1 position. The former effect operates at the denatured state level and causes a drop in protein stability for hydrophobic side chains, due to their decreased exposure upon denaturation. The latter factor influences the native state energetics and results from intrinsic properties of amino acids in a way similar to those observed for secondary structure propensities. In conclusion, our results suggest that the protein-stability-derived secondary structure propensity scales should be taken with more caution.

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Year:  2001        PMID: 11274462      PMCID: PMC2373960          DOI: 10.1110/ps.38101

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  51 in total

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Authors:  H Czapinska; J Otlewski; S Krzywda; G M Sheldrick; M Jaskólski
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2.  Electrophoretic analysis of the unfolding of proteins by urea.

Authors:  T E Creighton
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3.  Variability of the canonical loop conformations in serine proteinases inhibitors and other proteins.

Authors:  W Apostoluk; J Otlewski
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4.  Helix propensities are identical in proteins and peptides.

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5.  Circular dichroism of denatured barstar suggests residual structure,.

Authors:  B Nölting; R Golbik; A S Soler-González; A R Fersht
Journal:  Biochemistry       Date:  1997-08-12       Impact factor: 3.162

6.  Structure of single-disulfide variants of bovine pancreatic trypsin inhibitor (BPTI) as probed by their binding to bovine beta-trypsin.

Authors:  I Krokoszynska; M Dadlez; J Otlewski
Journal:  J Mol Biol       Date:  1998-01-23       Impact factor: 5.469

Review 7.  Areas, volumes, packing and protein structure.

Authors:  F M Richards
Journal:  Annu Rev Biophys Bioeng       Date:  1977

8.  Basic pancreatic trypsin inhibitor has unusual thermodynamic stability parameters.

Authors:  E Moses; H J Hinz
Journal:  J Mol Biol       Date:  1983-11-05       Impact factor: 5.469

9.  On the size of the active site in proteases. I. Papain.

Authors:  I Schechter; A Berger
Journal:  Biochem Biophys Res Commun       Date:  1967-04-20       Impact factor: 3.575

10.  The effect of cleaving the reactive-site peptide bond Lys-15--Ala-16 on the conformation of bovine trypsin-kallikrein inhibitor (K unitz) as revealed by solvent-perturbation spectra, circular dichroism and fluorescence.

Authors:  U Quast; J Engel; E Steffen; H Tschesche; H Jering; S Kupfer
Journal:  Eur J Biochem       Date:  1975-04-01
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  6 in total

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Authors:  Rachel D Cohen; Gary J Pielak
Journal:  Protein Sci       Date:  2017-06-12       Impact factor: 6.725

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4.  Propensities of aromatic amino acids versus leucine and proline to induce residual structure in the denatured-state ensemble of iso-1-cytochrome c.

Authors:  Michaela L Finnegan; Bruce E Bowler
Journal:  J Mol Biol       Date:  2010-09-17       Impact factor: 5.469

5.  Fluorine-induced polarity increases inhibitory activity of BPTI towards chymotrypsin.

Authors:  Jakob Leppkes; Nicole Dimos; Bernhard Loll; Thomas Hohmann; Michael Dyrks; Ariane Wieseke; Bettina G Keller; Beate Koksch
Journal:  RSC Chem Biol       Date:  2022-05-19

6.  Fluorine teams up with water to restore inhibitor activity to mutant BPTI.

Authors:  Shijie Ye; Bernhard Loll; Allison Ann Berger; Ulrike Mülow; Claudia Alings; Markus Christian Wahl; Beate Koksch
Journal:  Chem Sci       Date:  2015-06-12       Impact factor: 9.825

  6 in total

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