Literature DB >> 8521722

The EcoRI centromeric satellite DNA of the Sparidae family (Pisces, Perciformes) contains a sequence motive common to other vertebrate centromeric satellite DNAs.

M A Garrido-Ramos1, M Jamilena, R Lozano, C Ruiz Rejón, M Ruiz Rejón.   

Abstract

By means of cloning, sequencing, and fluorescence in situ hybridization, we have determined that the EcoRI satellite DNA family is conserved in the 10 sparid species analyzed here. Its conservation, its chromosomal location at the centromere of each chromosome, and its structural features could make this satellite DNA family an important structural and/or functional element of the centromeres of these species. Monomeric units of this satellite DNA have a consensus length of 187 bp. Its sequence is characterized by a high AT content and the presence of short runs of consecutive AT base pairs. These monomeric EcoRI repeats also contain three to four copies, depending on the species, of a short sequence reflecting the repetitive duplication and subsequent divergence of an ancestral 9-bp sequence in this family. This sequence motive is conserved in some parts of the monomeric units of the different species studied at the same positions, and, precisely, surrounding the area in which the curvature of the monomeric molecule is greatest. The 9-bp sequence motive is similar to other direct-repeat sequences of the centromeric satellite DNAs of other vertebrates, including those of amphibians and mammals.

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Year:  1995        PMID: 8521722     DOI: 10.1159/000134137

Source DB:  PubMed          Journal:  Cytogenet Cell Genet        ISSN: 0301-0171


  11 in total

1.  Organization of repetitive DNA sequences at pachytene chromosomes of gilthead seabream Sparus aurata (Pisces, Perciformes).

Authors:  N Cuñado; M A Garrido-Ramos; R de la Herrán; C Ruíz Rejón; M Ruíz Rejón; J L Santos
Journal:  Chromosome Res       Date:  2000       Impact factor: 5.239

2.  Novel methylation at GpC dinucleotide in the fish Sparus aurata genome.

Authors:  G Pontecorvo; B De Felice; M Carfagna
Journal:  Mol Biol Rep       Date:  2000       Impact factor: 2.316

3.  Molecular and cytogenetic characterization of repetitive DNA in the Antarctic polyplacophoran Nuttallochiton mirandus.

Authors:  Maria Assunta Biscotti; Marco Barucca; Teresa Capriglione; Gaetano Odierna; Ettore Olmo; Adriana Canapa
Journal:  Chromosome Res       Date:  2008-08-09       Impact factor: 5.239

4.  Chromosomal study of a lamprey (Lampetra zanandreai Vladykov, 1955) (Petromyzonida: Petromyzontiformes): conventional and FISH analysis.

Authors:  Vincenzo Caputo; Massimo Giovannotti; Paola Nisi Cerioni; Andrea Splendiani; James Tagliavini; Ettore Olmo
Journal:  Chromosome Res       Date:  2011-03-25       Impact factor: 5.239

Review 5.  Tandemly repeated DNA sequences and centromeric chromosomal regions of Arabidopsis species.

Authors:  J S Heslop-Harrison; Andrea Brandes; Trude Schwarzacher
Journal:  Chromosome Res       Date:  2003       Impact factor: 5.239

6.  A centromeric satellite DNA may be involved in heterochromatin compactness in gobiid fishes.

Authors:  Adriana Canapa; Paola Nisi Cerioni; Marco Barucca; Ettore Olmo; Vincenzo Caputo
Journal:  Chromosome Res       Date:  2002       Impact factor: 4.620

Review 7.  Satellite DNA: An Evolving Topic.

Authors:  Manuel A Garrido-Ramos
Journal:  Genes (Basel)       Date:  2017-09-18       Impact factor: 4.096

8.  Molecular cytogenetic characterization of chromosome site-specific repetitive sequences in the Arctic lamprey (Lethenteron camtschaticum, Petromyzontidae).

Authors:  Junko Ishijima; Yoshinobu Uno; Mitsuo Nunome; Chizuko Nishida; Shigehiro Kuraku; Yoichi Matsuda
Journal:  DNA Res       Date:  2017-02-01       Impact factor: 4.458

9.  Molecular evolution of the pDo500 satellite DNA family in Dolichopoda cave crickets (Rhaphidophoridae).

Authors:  Lene Martinsen; Federica Venanzetti; Arild Johnsen; Valerio Sbordoni; Lutz Bachmann
Journal:  BMC Evol Biol       Date:  2009-12-28       Impact factor: 3.260

10.  Evaluation of intra- and interspecific divergence of satellite DNA sequences by nucleotide frequency calculation and pairwise sequence comparison.

Authors:  Mikio Kato
Journal:  Biol Proced Online       Date:  2003-03-04       Impact factor: 3.244

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