Literature DB >> 21437736

Chromosomal study of a lamprey (Lampetra zanandreai Vladykov, 1955) (Petromyzonida: Petromyzontiformes): conventional and FISH analysis.

Vincenzo Caputo1, Massimo Giovannotti, Paola Nisi Cerioni, Andrea Splendiani, James Tagliavini, Ettore Olmo.   

Abstract

Karyotype and other chromosomal characteristics in the Adriatic brook lamprey Lampetra zanandreai, representative of one of the most ancestral group of vertebrates, were examined using conventional (Ag-staining, C-banding as well as CMA(3) and DAPI fluorescence) and molecular (FISH with 18/28S rDNA and EcoRI satDNA as probes) protocols with metaphase chromosomes derived from whole blood cultures. The chromosome complement had a modal diploid chromosome number of 2n = 164, as in other petromyzontid lamprey species. Ag-staining and CMA(3) fluorescence, as well as FISH with 18/28S rDNA probes, detected nucleolar organizer regions (NORs) close to the centromeres of the biarmed chromosomes of pairs 1 and 2, the largest chromosome pairs of the complement. In addition to NORs, CMA(3) fluorescence revealed positive signals in approximately 40 other chromosomes. DAPI stained mostly centromeric regions of many chromosomes as well as conspicuously massive blocks overlapping NOR sites. C-banding evidenced a large amount of constitutive heterochromatin in somatic chromosomes, with approximately 40 C-positive acrocentric elements completely heterochromatic, corresponding with the 40 CMA(3)+ chromosomes and positive heterochromatic blocks in pericentromeric regions of chromosome pairs 1 and 2. Polymerase chain reaction (PCR)-based cloning of satellite DNA with primers derived from Petromyzon marinus centromeric sequences was successful for L. zanandreai genomic DNA. The sequence was AT-rich (59%) and characterized by short consensus motifs similar to other centromeric satellite motifs. FISH using satDNA clones as a probe produced a fluorescent signal on a single pair of small chromosomes. This sequence was PCR-amplified also in L. planeri and P. marinus genomic DNA, and the evolution of this repetitive element in the above species was analysed.

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Year:  2011        PMID: 21437736     DOI: 10.1007/s10577-011-9197-4

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  46 in total

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2.  Programmed loss of millions of base pairs from a vertebrate genome.

Authors:  Jeramiah J Smith; Francesca Antonacci; Evan E Eichler; Chris T Amemiya
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-26       Impact factor: 11.205

3.  A new EcoRI family of satellite DNA in lampreys.

Authors:  F Boán; A Viñas; J M Rodríguez; L Sánchez; J Gómez-Márquez
Journal:  FEBS Lett       Date:  1996-09-30       Impact factor: 4.124

4.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

5.  The mitotic chromosomes of the lamprey Mordacia mordax (Agnatha: Petromyzonidae).

Authors:  I C Potter; E S Robinson; S M Walton
Journal:  Experientia       Date:  1968-09-15

6.  Controlled silver-staining of nucleolus organizer regions with a protective colloidal developer: a 1-step method.

Authors:  W M Howell; D A Black
Journal:  Experientia       Date:  1980-08-15

7.  Heterochromatin of the scarab beetle, Bubas bison (Coleoptera: Scarabaeidae) II. Evidence for AT-rich compartmentalization and a high amount of rDNA copies.

Authors:  Mariastella Colomba; Roberto Vitturi; Angelo Libertini; Armando Gregorini; Mario Zunino
Journal:  Micron       Date:  2005-07-13       Impact factor: 2.251

8.  New satellite DNA in Lacerta s. str. lizards (Sauria: Lacertidae): evolutionary pathways and phylogenetic impact.

Authors:  Doina Ciobanu; Vernata V Grechko; Ilya S Darevsky; Dmitri A Kramerov
Journal:  J Exp Zool B Mol Dev Evol       Date:  2004-11-15       Impact factor: 2.656

9.  Satellite DNA repeat sequence variation is low in three species of burying beetles in the genus Nicrophorus (Coleoptera: Silphidae).

Authors:  L M King; M P Cummings
Journal:  Mol Biol Evol       Date:  1997-11       Impact factor: 16.240

10.  Organization and molecular cytogenetics of a satellite DNA family from Hoplias malabaricus (Pisces, Erythrinidae).

Authors:  T Haaf; M Schmid; C Steinlein; P M Galetti; H F Willard
Journal:  Chromosome Res       Date:  1993-05       Impact factor: 5.239

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  7 in total

1.  Characterization and Evolution of Germ1, an Element that Undergoes Diminution in Lampreys (Cyclostomata: Petromyzontidae).

Authors:  Rex Meade Strange; Landon L Moore
Journal:  J Mol Evol       Date:  2019-09-05       Impact factor: 2.395

2.  Cytogenetic evidences of genome rearrangement and differential epigenetic chromatin modification in the sea lamprey (Petromyzon marinus).

Authors:  Lara Covelo-Soto; Paloma Morán; Juan J Pasantes; Concepción Pérez-García
Journal:  Genetica       Date:  2014-11-29       Impact factor: 1.082

3.  Repetitive sequences associated with differentiation of W chromosome in Semaprochilodus taeniurus.

Authors:  Maria Leandra Terencio; Carlos Henrique Schneider; Maria Claudia Gross; Viviane Nogaroto; Mara Cristina de Almeida; Roberto Ferreira Artoni; Marcelo Ricardo Vicari; Eliana Feldberg
Journal:  Genetica       Date:  2013-01-17       Impact factor: 1.082

4.  Lack of satellite DNA species-specific homogenization and relationship to chromosomal rearrangements in monitor lizards (Varanidae, Squamata).

Authors:  Ornjira Prakhongcheep; Watcharaporn Thapana; Aorarat Suntronpong; Worapong Singchat; Khampee Pattanatanang; Rattanin Phatcharakullawarawat; Narongrit Muangmai; Surin Peyachoknagul; Kazumi Matsubara; Tariq Ezaz; Kornsorn Srikulnath
Journal:  BMC Evol Biol       Date:  2017-08-16       Impact factor: 3.260

5.  Molecular cytogenetic characterization of chromosome site-specific repetitive sequences in the Arctic lamprey (Lethenteron camtschaticum, Petromyzontidae).

Authors:  Junko Ishijima; Yoshinobu Uno; Mitsuo Nunome; Chizuko Nishida; Shigehiro Kuraku; Yoichi Matsuda
Journal:  DNA Res       Date:  2017-02-01       Impact factor: 4.458

6.  Analyses of the Updated "Animal rDNA Loci Database" with an Emphasis on Its New Features.

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7.  The Nuclear DNA Content and Genetic Diversity of Lampetra morii.

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Journal:  PLoS One       Date:  2016-07-07       Impact factor: 3.240

  7 in total

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