Literature DB >> 8506125

Unexpected substrate specificity of T4 DNA ligase revealed by in vitro selection.

K Harada1, L E Orgel.   

Abstract

We have used in vitro selection techniques to characterize DNA sequences that are ligated efficiently by T4 DNA ligase. We find that the ensemble of selected sequences ligates about 50 times as efficiently as the random mixture of sequences used as the input for selection. Surprisingly many of the selected sequences failed to produce a match at or close to the ligation junction. None of the 20 selected oligomers that we sequenced produced a match two bases upstream from the ligation junction.

Keywords:  NASA Discipline Exobiology; NASA Discipline Number 52-20; NASA Discipline Number 93-10; NASA Program Exobiology; NASA Program NSCORT; Non-NASA Center

Mesh:

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Year:  1993        PMID: 8506125      PMCID: PMC309522          DOI: 10.1093/nar/21.10.2287

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  4 in total

1.  A ligase-mediated gene detection technique.

Authors:  U Landegren; R Kaiser; J Sanders; L Hood
Journal:  Science       Date:  1988-08-26       Impact factor: 47.728

2.  CXII. Total synthesis of the structural gene for an alanine transfer RNA from yeast. Enzymic joining of the chemically synthesized polydeoxynucleotides to form the DNA duplex representing nucleotide sequence 1 to 20.

Authors:  V Sgaramella; H G Khorana
Journal:  J Mol Biol       Date:  1972-12-28       Impact factor: 5.469

3.  On the fidelity of phage T4-induced polynucleotide ligase in the joining of chemically synthesized deoxyribooligonucleotides.

Authors:  C M Tsiapalis; S A Narang
Journal:  Biochem Biophys Res Commun       Date:  1970-05-22       Impact factor: 3.575

4.  Specificity of the nick-closing activity of bacteriophage T4 DNA ligase.

Authors:  D Y Wu; R B Wallace
Journal:  Gene       Date:  1989       Impact factor: 3.688

  4 in total
  13 in total

1.  Effects of base mismatches on joining of short oligodeoxynucleotides by DNA ligases.

Authors:  C E Pritchard; E M Southern
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

2.  Canonical nucleosides can be utilized by T4 DNA ligase as universal template bases at ligation junctions.

Authors:  Rashada C Alexander; Ashley K Johnson; Jeffrey A Thorpe; Travis Gevedon; Stephen M Testa
Journal:  Nucleic Acids Res       Date:  2003-06-15       Impact factor: 16.971

Review 3.  All you wanted to know about SELEX.

Authors:  S J Klug; M Famulok
Journal:  Mol Biol Rep       Date:  1994       Impact factor: 2.316

4.  Improving the fidelity of Thermus thermophilus DNA ligase.

Authors:  J Luo; D E Bergstrom; F Barany
Journal:  Nucleic Acids Res       Date:  1996-08-01       Impact factor: 16.971

5.  Deoxyribozyme-based method for absolute quantification of N 6-methyladenosine fractions at specific sites of RNA.

Authors:  Magda Bujnowska; Jiacheng Zhang; Qing Dai; Emily M Heideman; Jingyi Fei
Journal:  J Biol Chem       Date:  2020-04-08       Impact factor: 5.157

6.  In vitro selection of optimal DNA substrates for ligation by a water-soluble carbodiimide.

Authors:  K Harada; L E Orgel
Journal:  J Mol Evol       Date:  1994-06       Impact factor: 2.395

7.  In vitro ligation of oligodeoxynucleotides containing C8-oxidized purine lesions using bacteriophage T4 DNA ligase.

Authors:  Xiaobei Zhao; James G Muller; Mohan Halasyam; Sheila S David; Cynthia J Burrows
Journal:  Biochemistry       Date:  2007-02-27       Impact factor: 3.162

8.  Fidelity of DNA ligation: a novel experimental approach based on the polymerisation of libraries of oligonucleotides.

Authors:  J N Housby; E M Southern
Journal:  Nucleic Acids Res       Date:  1998-09-15       Impact factor: 16.971

9.  Detection of point mutations with a modified ligase chain reaction (Gap-LCR).

Authors:  K Abravaya; J J Carrino; S Muldoon; H H Lee
Journal:  Nucleic Acids Res       Date:  1995-02-25       Impact factor: 16.971

10.  A single-molecule sequencing assay for the comprehensive profiling of T4 DNA ligase fidelity and bias during DNA end-joining.

Authors:  Vladimir Potapov; Jennifer L Ong; Bradley W Langhorst; Katharina Bilotti; Dan Cahoon; Barry Canton; Thomas F Knight; Thomas C Evans; Gregory J S Lohman
Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

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