Literature DB >> 8474249

Cellular automata approaches to biological modeling.

G B Ermentrout1, L Edelstein-Keshet.   

Abstract

We review a number of biologically motivated cellular automata (CA) that arise in models of excitable and oscillatory media, in developmental biology, in neurobiology, and in population biology. We suggest technical and theoretical arguments that permit greater speed and enhanced realism, and apply these to several classical examples of pattern formation. We also describe CA that arise in models for fibroblast aggregation, branching networks, trail following, and neuronal maps.

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Year:  1993        PMID: 8474249     DOI: 10.1006/jtbi.1993.1007

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  52 in total

1.  Modeling the dynamics of human hair cycles by a follicular automaton.

Authors:  J Halloy; B A Bernard; G Loussouarn; A Goldbeter
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

2.  The genetics of geometry.

Authors:  Enrico Coen; Anne-Gaëlle Rolland-Lagan; Mark Matthews; J Andrew Bangham; Przemyslaw Prusinkiewicz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-11       Impact factor: 11.205

3.  Cellular self-organization by autocatalytic alignment feedback.

Authors:  Michael Junkin; Siu Ling Leung; Samantha Whitman; Carol C Gregorio; Pak Kin Wong
Journal:  J Cell Sci       Date:  2011-12-22       Impact factor: 5.285

4.  An automaton model for the cell cycle.

Authors:  Atilla Altinok; Didier Gonze; Francis Lévi; Albert Goldbeter
Journal:  Interface Focus       Date:  2010-11-24       Impact factor: 3.906

Review 5.  Translational systems approaches to the biology of inflammation and healing.

Authors:  Yoram Vodovotz; Gregory Constantine; James Faeder; Qi Mi; Jonathan Rubin; John Bartels; Joydeep Sarkar; Robert H Squires; David O Okonkwo; Jörg Gerlach; Ruben Zamora; Shirley Luckhart; Bard Ermentrout; Gary An
Journal:  Immunopharmacol Immunotoxicol       Date:  2010-06       Impact factor: 2.730

6.  Self-assembling plants and integration across ecological scales.

Authors:  Roderick Hunt; R L Colasanti
Journal:  Ann Bot       Date:  2007-05       Impact factor: 4.357

Review 7.  Translational systems biology: introduction of an engineering approach to the pathophysiology of the burn patient.

Authors:  Gary An; James Faeder; Yoram Vodovotz
Journal:  J Burn Care Res       Date:  2008 Mar-Apr       Impact factor: 1.845

Review 8.  At the biological modeling and simulation frontier.

Authors:  C Anthony Hunt; Glen E P Ropella; Tai Ning Lam; Jonathan Tang; Sean H J Kim; Jesse A Engelberg; Shahab Sheikh-Bahaei
Journal:  Pharm Res       Date:  2009-09-09       Impact factor: 4.200

9.  Spatial pattern formation in the lung.

Authors:  Graham M Donovan; Thibaut Kritter
Journal:  J Math Biol       Date:  2014-05-09       Impact factor: 2.259

10.  A computational approach to understand in vitro alveolar morphogenesis.

Authors:  Sean H J Kim; Wei Yu; Keith Mostov; Michael A Matthay; C Anthony Hunt
Journal:  PLoS One       Date:  2009-03-13       Impact factor: 3.240

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