Literature DB >> 14960734

The genetics of geometry.

Enrico Coen1, Anne-Gaëlle Rolland-Lagan, Mark Matthews, J Andrew Bangham, Przemyslaw Prusinkiewicz.   

Abstract

Although much progress has been made in understanding how gene expression patterns are established during development, much less is known about how these patterns are related to the growth of biological shapes. Here we describe conceptual and experimental approaches to bridging this gap, with particular reference to plant development where lack of cell movement simplifies matters. Growth and shape change in plants can be fully described with four types of regional parameter: growth rate, anisotropy, direction, and rotation. A key requirement is to understand how these parameters both influence and respond to the action of genes. This can be addressed by using mechanistic models that capture interactions among three components: regional identities, regionalizing morphogens, and polarizing morphogens. By incorporating these interactions within a growing framework, it is possible to generate shape changes and associated gene expression patterns according to particular hypotheses. The results can be compared with experimental observations of growth of normal and mutant forms, allowing further hypotheses and experiments to be formulated. We illustrate these principles with a study of snapdragon petal growth.

Entities:  

Mesh:

Year:  2004        PMID: 14960734      PMCID: PMC387316          DOI: 10.1073/pnas.0306308101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

1.  A model for dictyostelium slug movement

Authors: 
Journal:  J Theor Biol       Date:  1999-07-21       Impact factor: 2.691

Review 2.  Regulation of cell polarity during eukaryotic chemotaxis: the chemotactic compass.

Authors:  Orion D Weiner
Journal:  Curr Opin Cell Biol       Date:  2002-04       Impact factor: 8.382

Review 3.  Transductions to generate plant form and pattern: an essay on cause and effect.

Authors:  P B Green
Journal:  Ann Bot       Date:  1996-09       Impact factor: 4.357

Review 4.  Organogenesis: molecular mechanisms of tubulogenesis.

Authors:  Brigid L M Hogan; Peter A Kolodziej
Journal:  Nat Rev Genet       Date:  2002-07       Impact factor: 53.242

5.  Growth dynamics underlying petal shape and asymmetry.

Authors:  Anne-Gaëlle Rolland-Lagan; J Andrew Bangham; Enrico Coen
Journal:  Nature       Date:  2003-03-13       Impact factor: 49.962

6.  Fidelity in planar cell polarity signalling.

Authors:  Dali Ma; Chung-hui Yang; Helen McNeill; Michael A Simon; Jeffrey D Axelrod
Journal:  Nature       Date:  2003-01-19       Impact factor: 49.962

7.  Clonal analysis of leaf development in cotton.

Authors:  L Dolan; R Poethig
Journal:  Am J Bot       Date:  1998-03       Impact factor: 3.844

8.  Mechanical signals in plant development: a new method for single cell studies.

Authors:  T M Lynch; P M Lintilhac
Journal:  Dev Biol       Date:  1997-01-15       Impact factor: 3.582

9.  The cellular parameters of leaf development in tobacco: a clonal analysis.

Authors:  R S Poethig; I M Sussex
Journal:  Planta       Date:  1985-08       Impact factor: 4.116

10.  Opposing RA and FGF signals control proximodistal vertebrate limb development through regulation of Meis genes.

Authors:  N Mercader; E Leonardo; M E Piedra; C Martínez-A; M A Ros; M Torres
Journal:  Development       Date:  2000-09       Impact factor: 6.868

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  73 in total

1.  Computational method for quantifying growth patterns at the adaxial leaf surface in three dimensions.

Authors:  Lauren Remmler; Anne-Gaëlle Rolland-Lagan
Journal:  Plant Physiol       Date:  2012-03-08       Impact factor: 8.340

2.  Biography of Enrico Coen.

Authors:  Christen Brownlee
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-29       Impact factor: 11.205

3.  Spatiotemporal variation of leaf epidermal cell growth: a quantitative analysis of Arabidopsis thaliana wild-type and triple cyclinD3 mutant plants.

Authors:  Joanna Elsner; Marek Michalski; Dorota Kwiatkowska
Journal:  Ann Bot       Date:  2012-02-02       Impact factor: 4.357

4.  Cellular force microscopy for in vivo measurements of plant tissue mechanics.

Authors:  Anne-Lise Routier-Kierzkowska; Alain Weber; Petra Kochova; Dimitris Felekis; Bradley J Nelson; Cris Kuhlemeier; Richard S Smith
Journal:  Plant Physiol       Date:  2012-02-21       Impact factor: 8.340

Review 5.  How a plant builds leaves.

Authors:  Siobhan A Braybrook; Cris Kuhlemeier
Journal:  Plant Cell       Date:  2010-04-27       Impact factor: 11.277

6.  Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution.

Authors:  Romain Fernandez; Pradeep Das; Vincent Mirabet; Eric Moscardi; Jan Traas; Jean-Luc Verdeil; Grégoire Malandain; Christophe Godin
Journal:  Nat Methods       Date:  2010-06-13       Impact factor: 28.547

7.  Mechanical feedback as a possible regulator of tissue growth.

Authors:  Boris I Shraiman
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-22       Impact factor: 11.205

8.  A new method for quantifying three-dimensional interactions between biological structures.

Authors:  Bruno A N Travençolo; Claudio Martínez Debat; Marcelo E Beletti; José R Sotelo Silveira; Ricardo Ehrlich; Luciano da F Costa
Journal:  J Anat       Date:  2007-02       Impact factor: 2.610

9.  Molecular analysis of early rice stamen development using organ-specific gene expression profiling.

Authors:  Xiao-Chun Lu; Hua-Qin Gong; Mo-Li Huang; Su-Lan Bai; Yang-Bo He; Xizeng Mao; Zhi Geng; Song-Gang Li; Liping Wei; Jie-Shuai Yuwen; Zhi-Hong Xu; Shu-Nong Bai
Journal:  Plant Mol Biol       Date:  2006-08       Impact factor: 4.076

Review 10.  Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphere.

Authors:  Kristine Hill; Silvana Porco; Guillaume Lobet; Susan Zappala; Sacha Mooney; Xavier Draye; Malcolm J Bennett
Journal:  Plant Physiol       Date:  2013-10-18       Impact factor: 8.340

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