Literature DB >> 8471034

Large changes of transition-state structure during experimental evolution of an enzyme.

K Srinivasan1, A Konstantinidis, M L Sinnott, B G Hall.   

Abstract

The question of whether, during the evolution of an enzyme, the transition state of the catalysed reaction is largely unchanged, or whether transition state and protein change together, was examined using the egb beta-galactosidases of Escherichia coli. Charge development at the first chemical state was assumed [Konstantinidis and Sinnott (1991) Biochem. J. 279, 587-593] to be proportional to delta delta G++, the ratio of second-order rate constants for the hydrolysis of beta-D-galactopyranosyl fluoride and 1-fluoro-D-galactopyranosyl fluoride, expressed as a free-energy difference. delta delta G++ (kJ.mol-1) falls from 10.4 for wild-type enzyme to 6.8 and 7.2 as a consequence of two different single amino-acid changes (which arise from single evolutionary events), to 6.3 as a consequence of the two amino-acid changes together, and then increases slightly to 7.3 as a consequence of a third single evolutionary change involving three further amino-acid changes.

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Year:  1993        PMID: 8471034      PMCID: PMC1132473          DOI: 10.1042/bj2910015

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  18 in total

Review 1.  Binding energy, specificity, and enzymic catalysis: the circe effect.

Authors:  W P Jencks
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1975

2.  Glycosyl fluorides and azides.

Authors:  F MICHEEL; A KLEMER
Journal:  Adv Carbohydr Chem       Date:  1961

3.  Evolution of enzyme function and the development of catalytic efficiency.

Authors:  W J Albery; J R Knowles
Journal:  Biochemistry       Date:  1976-12-14       Impact factor: 3.162

4.  Evolutionary optimization of the catalytic effectiveness of an enzyme.

Authors:  J J Burbaum; R T Raines; W J Albery; J R Knowles
Journal:  Biochemistry       Date:  1989-11-28       Impact factor: 3.162

5.  Effect of evolution on the kinetic properties of enzymes.

Authors:  G Pettersson
Journal:  Eur J Biochem       Date:  1989-10-01

6.  Experimental evolution of a new enzymatic function. Kinetic analysis of the ancestral (ebg) and evolved (ebg) enzymes.

Authors:  B G Hall
Journal:  J Mol Biol       Date:  1976-10-15       Impact factor: 5.469

7.  Changes in the substrate specificities of an enzyme during directed evolution of new functions.

Authors:  B G Hall
Journal:  Biochemistry       Date:  1981-07-07       Impact factor: 3.162

8.  The catalytic consequences of experimental evolution. Transition-state structure during catalysis by the evolved beta-galactosidases of Escherichia coli (ebg enzymes) changed by a single mutational event.

Authors:  B F Li; D Holdup; C A Morton; M L Sinnott
Journal:  Biochem J       Date:  1989-05-15       Impact factor: 3.857

9.  The beta-galactosidase-catalysed hydrolyses of beta-d-galactopyranosyl pyridium salts. Rate-limiting generation of an enzyme-bound galactopyranosyl cation in a process dependent only on aglycone acidity.

Authors:  M L Sinnott; S G Withers
Journal:  Biochem J       Date:  1974-12       Impact factor: 3.857

10.  The effect of methanol and dioxan on the rates of the beta-galactosidase-catalysed hydrolyses of some beta-D-galactrophyranosides: rate-limiting degalactosylation. The ph-dependence of galactosylation and degalactosylation.

Authors:  M L Sinnott; O M Viratelle
Journal:  Biochem J       Date:  1973-05       Impact factor: 3.857

View more
  6 in total

1.  Lignocellulose degradation by Phanerochaete chrysosporium: purification and characterization of the main alpha-galactosidase.

Authors:  H Brumer; P F Sims; M L Sinnott
Journal:  Biochem J       Date:  1999-04-01       Impact factor: 3.857

2.  Larger increases in sensitivity to paracatalytic inactivation than in catalytic competence during experimental evolution of the second beta-galactosidase of Escherichia coli.

Authors:  S V Calugaru; S Krishnan; C J Chany; B G Hall; M L Sinnott
Journal:  Biochem J       Date:  1997-07-01       Impact factor: 3.857

3.  On the specificity of adaptive mutations.

Authors:  B G Hall
Journal:  Genetics       Date:  1997-01       Impact factor: 4.562

Review 4.  Glycosidase inhibition: assessing mimicry of the transition state.

Authors:  Tracey M Gloster; Gideon J Davies
Journal:  Org Biomol Chem       Date:  2009-11-05       Impact factor: 3.876

5.  Catalytic consequences of experimental evolution: catalysis by a 'third-generation' evolvant of the second beta-galactosidase of Escherichia coli, ebgabcde, and by ebgabcd, a 'second-generation' evolvant containing two supposedly 'kinetically silent' mutations.

Authors:  S Krishnan; B G Hall; M L Sinnott
Journal:  Biochem J       Date:  1995-12-15       Impact factor: 3.857

6.  Catalysis by the large subunit of the second beta-galactosidase of Escherichia coli in the absence of the small subunit.

Authors:  S V Calugaru; B G Hall; M L Sinnott
Journal:  Biochem J       Date:  1995-11-15       Impact factor: 3.857

  6 in total

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