Literature DB >> 8441659

The helical repeat of DNA at high temperature.

M Duguet1.   

Abstract

The increasing number of studies on thermophilic organisms addressed the question of DNA double helix parameters at high temperature. The present study shows that the helix rotation angle per base pair omega of an unconstrained DNA decreases linearly upon temperature increase, up to the premelting range. In the ionic conditions tested, this rule extends to temperatures up to 85 degrees C, which is a common growth temperature for many hyperthermophilic organisms. In addition, the torsional constant K of DNA decreases with temperature, indicating that the energy required to modify the DNA twist is lower at high temperature. These findings have several implications for people working on the structure and enzymology of DNA at high temperature.

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Year:  1993        PMID: 8441659      PMCID: PMC309140          DOI: 10.1093/nar/21.3.463

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  18 in total

1.  Evidence that a plasmid from a hyperthermophilic archaebacterium is relaxed at physiological temperatures.

Authors:  F Charbonnier; G Erauso; T Barbeyron; D Prieur; P Forterre
Journal:  J Bacteriol       Date:  1992-10       Impact factor: 3.490

2.  Conformational fluctuations of DNA helix.

Authors:  D E Depew; J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1975-11       Impact factor: 11.205

Review 3.  Bacterial evolution.

Authors:  C R Woese
Journal:  Microbiol Rev       Date:  1987-06

4.  Facile cruciform formation by an (A-T)34 sequence from a Xenopus globin gene.

Authors:  D R Greaves; R K Patient; D M Lilley
Journal:  J Mol Biol       Date:  1985-10-05       Impact factor: 5.469

5.  Regulation of bacterial DNA supercoiling: plasmid linking numbers vary with growth temperature.

Authors:  E Goldstein; K Drlica
Journal:  Proc Natl Acad Sci U S A       Date:  1984-07       Impact factor: 11.205

6.  DNA topoisomerases from rat liver: physiological variations.

Authors:  M Duguet; C Lavenot; F Harper; G Mirambeau; A M De Recondo
Journal:  Nucleic Acids Res       Date:  1983-02-25       Impact factor: 16.971

7.  Reverse gyrase--a topoisomerase which introduces positive superhelical turns into DNA.

Authors:  A Kikuchi; K Asai
Journal:  Nature       Date:  1984 Jun 21-27       Impact factor: 49.962

8.  Thermophilic DNA ligase. Purification and properties of the enzyme from Thermus thermophilus HB8.

Authors:  M Takahashi; E Yamaguchi; T Uchida
Journal:  J Biol Chem       Date:  1984-08-25       Impact factor: 5.157

9.  Thermophilic HB8 DNA ligase: effects of polyethylene glycols and polyamines on blunt-end ligation of DNA.

Authors:  M Takahashi; T Uchida
Journal:  J Biochem       Date:  1986-07       Impact factor: 3.387

10.  High positive supercoiling in vitro catalyzed by an ATP and polyethylene glycol-stimulated topoisomerase from Sulfolobus acidocaldarius.

Authors:  P Forterre; G Mirambeau; C Jaxel; M Nadal; M Duguet
Journal:  EMBO J       Date:  1985-08       Impact factor: 11.598

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  29 in total

1.  Plasmid pGS5 from the hyperthermophilic archaeon Archaeoglobus profundus is negatively supercoiled.

Authors:  P López-García; P Forterre; J van der Oost; G Erauso
Journal:  J Bacteriol       Date:  2000-09       Impact factor: 3.490

2.  Topoisomerase activity of the hyperthermophilic replication initiator protein Rep75.

Authors:  S Marsin; E Marguet; P Forterre
Journal:  Nucleic Acids Res       Date:  2000-06-01       Impact factor: 16.971

3.  Speculations on the origin of life and thermophily: review of available information on reverse gyrase suggests that hyperthermophilic procaryotes are not so primitive.

Authors:  P Forterre; F Confalonieri; F Charbonnier; M Duguet
Journal:  Orig Life Evol Biosph       Date:  1995-06       Impact factor: 1.950

4.  Equilibrium distributions of topological states in circular DNA: interplay of supercoiling and knotting.

Authors:  A A Podtelezhnikov; N R Cozzarelli; A V Vologodskii
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

Review 5.  Coping with the cold: the cold shock response in the Gram-positive soil bacterium Bacillus subtilis.

Authors:  Michael H W Weber; Mohamed A Marahiel
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2002-07-29       Impact factor: 6.237

6.  Effect of spontaneous twist on DNA minicircles.

Authors:  Shlomi Medalion; David A Kessler; Yitzhak Rabin
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

7.  Winding of the DNA helix by divalent metal ions.

Authors:  Y C Xu; H Bremer
Journal:  Nucleic Acids Res       Date:  1997-10-15       Impact factor: 16.971

8.  Transcriptional analysis of the two reverse gyrase encoding genes of Sulfolobus solfataricus P2 in relation to the growth phases and temperature conditions.

Authors:  Florence Garnier; Marc Nadal
Journal:  Extremophiles       Date:  2008-09-06       Impact factor: 2.395

9.  Monte Carlo simulations of supercoiling free energies for unknotted and trefoil knotted DNAs.

Authors:  J A Gebe; S A Allison; J B Clendenning; J M Schurr
Journal:  Biophys J       Date:  1995-02       Impact factor: 4.033

10.  In vitro DNA binding of the archaeal protein Sso7d induces negative supercoiling at temperatures typical for thermophilic growth.

Authors:  P López-García; S Knapp; R Ladenstein; P Forterre
Journal:  Nucleic Acids Res       Date:  1998-05-15       Impact factor: 16.971

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