Literature DB >> 8427927

Hydrational and intrinsic compressibilities of globular proteins.

D P Kharakoz1, A P Sarvazyan.   

Abstract

Partial compressibilities of globular proteins in water are reviewed. Contribution of hydrational and of intrinsic compressibilities to experimental partial quantity have been evaluated from ultrasonic data using two independent methods: (a) additive calculation of the hydrational contributions of the surface atomic groups and (b) an analysis of correlation between partial compressibility and molecular surface area. The value (14 +/- 3) X 10(-6) bar(-1) for the isothermal compressibility coefficient of the protein interior at 25 degrees C was obtained as an average value for variety of globular proteins. This value is similar to that of solid organic polymers. Possible relaxation contribution to partial compressibility is roughly estimated from comparison of thermodynamic with x-ray data on protein compressibility. The average compressibility of water in the hydration shell of proteins was found to be 35 X 10(-6) bar(-1), which is 20% less than that of pure water.

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Year:  1993        PMID: 8427927     DOI: 10.1002/bip.360330103

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  14 in total

Review 1.  Protein compressibility, dynamics, and pressure.

Authors:  D P Kharakoz
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

2.  Hydration and protein folding in water and in reverse micelles: compressibility and volume changes.

Authors:  D Valdez; J Y Le Huérou; M Gindre; W Urbach; M Waks
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

3.  Adhesive-cohesive model for protein compressibility: an alternative perspective on stability.

Authors:  Voichita M Dadarlat; Carol Beth Post
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-24       Impact factor: 11.205

4.  Local compressibilities of proteins: comparison of optical experiments and simulations for horse heart cytochrome-c.

Authors:  Christina Scharnagl; Maria Reif; Josef Friedrich
Journal:  Biophys J       Date:  2005-04-15       Impact factor: 4.033

5.  Decomposition of protein experimental compressibility into intrinsic and hydration shell contributions.

Authors:  Voichita M Dadarlat; Carol Beth Post
Journal:  Biophys J       Date:  2006-09-22       Impact factor: 4.033

6.  The enzyme horseradish peroxidase is less compressible at higher pressures.

Authors:  László Smeller; Judit Fidy
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

7.  Cavity-creating mutations in Pseudomonas aeruginosa azurin: effects on protein dynamics and stability.

Authors:  Edi Gabellieri; Ettore Balestreri; Alvaro Galli; Patrizia Cioni
Journal:  Biophys J       Date:  2008-04-18       Impact factor: 4.033

8.  Intrinsic compressibility and volume compression in solvated proteins by molecular dynamics simulation at high pressure.

Authors:  E Paci; M Marchi
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

9.  Pressure response of protein backbone structure. Pressure-induced amide 15N chemical shifts in BPTI.

Authors:  K Akasaka; H Li; H Yamada; R Li; T Thoresen; C K Woodward
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

10.  Protein refractive index increment is determined by conformation as well as composition.

Authors:  Domarin Khago; Jan C Bierma; Kyle W Roskamp; Natalia Kozlyuk; Rachel W Martin
Journal:  J Phys Condens Matter       Date:  2018-10-03       Impact factor: 2.333

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