Literature DB >> 8422348

Acetylcholinesterase: electrostatic steering increases the rate of ligand binding.

R C Tan1, T N Truong, J A McCammon, J L Sussman.   

Abstract

Brownian dynamics simulations have been used to calculate the diffusion-controlled rate constants for the binding of a positively charged ligand to several models of acetylcholinesterase (AChE). The crystal structure was used to define the detailed topography and the active sites of the dimeric enzyme. The electric field around AChE was then computed by solving the Poisson equation for different charge distributions in the enzyme at zero ionic strength. These fields were used in turn to calculate the forces on the diffusing ligand. Significant increases in the rate constant resulted in going from a model with no charges to one with the net charges concentrated at the centers of the monomers and then to a model with a realistic distribution of charges throughout the enzyme. The results show that electrostatic steering of ligands contributes to the high rate constants that are observed experimentally for AChE.

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Year:  1993        PMID: 8422348     DOI: 10.1021/bi00053a003

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  41 in total

1.  Electrostatic interactions regulate desensitization of the nicotinic acetylcholine receptor.

Authors:  X Z Song; S E Pedersen
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

2.  A modular treatment of molecular traffic through the active site of cholinesterase.

Authors:  S A Botti; C E Felder; S Lifson; J L Sussman; I Silman
Journal:  Biophys J       Date:  1999-11       Impact factor: 4.033

3.  The dynamics of ligand barrier crossing inside the acetylcholinesterase gorge.

Authors:  Jennifer M Bui; Richard H Henchman; J Andrew McCammon
Journal:  Biophys J       Date:  2003-10       Impact factor: 4.033

4.  Finite element solution of the steady-state Smoluchowski equation for rate constant calculations.

Authors:  Yuhua Song; Yongjie Zhang; Tongye Shen; Chandrajit L Bajaj; J Andrew McCammon; Nathan A Baker
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

5.  Small-angle X-ray scattering analysis of the bifunctional antibiotic resistance enzyme aminoglycoside (6') acetyltransferase-ie/aminoglycoside (2'') phosphotransferase-ia reveals a rigid solution structure.

Authors:  Shane J Caldwell; Albert M Berghuis
Journal:  Antimicrob Agents Chemother       Date:  2012-01-30       Impact factor: 5.191

6.  Nicotinic acetylcholine receptor channel electrostatics determined by diffusion-enhanced luminescence energy transfer.

Authors:  Robert H Meltzer; Monica M Lurtz; Theodore G Wensel; Steen E Pedersen
Journal:  Biophys J       Date:  2006-06-02       Impact factor: 4.033

7.  Electrostatic steering at acetylcholine binding sites.

Authors:  Robert H Meltzer; Errol Thompson; Kizhake V Soman; Xing-Zhi Song; Jerry O Ebalunode; Theodore G Wensel; James M Briggs; Steen E Pedersen
Journal:  Biophys J       Date:  2006-06-02       Impact factor: 4.033

8.  Enhancement of diffusion-controlled reaction rates by surface-induced orientational restriction.

Authors:  Ambarish Nag; Aaron R Dinner
Journal:  Biophys J       Date:  2005-11-18       Impact factor: 4.033

9.  Computational methods for biomolecular electrostatics.

Authors:  Feng Dong; Brett Olsen; Nathan A Baker
Journal:  Methods Cell Biol       Date:  2008       Impact factor: 1.441

10.  Association of aminoglycosidic antibiotics with the ribosomal A-site studied with Brownian dynamics.

Authors:  Maciej Długosz; Jan M Antosiewicz; Joanna Trylska
Journal:  J Chem Theory Comput       Date:  2008-04       Impact factor: 6.006

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