Literature DB >> 16299070

Enhancement of diffusion-controlled reaction rates by surface-induced orientational restriction.

Ambarish Nag1, Aaron R Dinner.   

Abstract

We explore the means by which immobilization of a substrate on a surface can increase the rate of a diffusion-controlled enzymatic reaction. A quasichemical approach is developed and compared with Brownian dynamics simulations. We use these methods to show that restricting only the orientation of the enzyme by long-range interactions with the surface is sufficient for enhancing catalysis.

Mesh:

Year:  2005        PMID: 16299070      PMCID: PMC1367114          DOI: 10.1529/biophysj.105.072785

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  20 in total

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Authors:  R L Rich; D G Myszka
Journal:  Curr Opin Biotechnol       Date:  2000-02       Impact factor: 9.740

2.  Effective rate models for receptors distributed in a layer above a surface: application to cells and Biacore.

Authors:  Carla Wofsy; Byron Goldstein
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

3.  Electroactive monolayer substrates that selectively release adherent cells.

Authors:  W S Yeo; C D Hodneland; M Mrksich
Journal:  Chembiochem       Date:  2001-08-03       Impact factor: 3.164

4.  Self-assembled monolayers that transduce enzymatic activities to electrical signals.

Authors:  Woon-Seok Yeo; Milan Mrksich
Journal:  Angew Chem Int Ed Engl       Date:  2003-07-14       Impact factor: 15.336

5.  Electrostatic steering and ionic tethering in enzyme-ligand binding: insights from simulations.

Authors:  R C Wade; R R Gabdoulline; S K Lüdemann; V Lounnas
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

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Authors:  H C Berg; E M Purcell
Journal:  Biophys J       Date:  1977-11       Impact factor: 4.033

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Authors:  V A Bloomfield; S Prager
Journal:  Biophys J       Date:  1979-09       Impact factor: 4.033

8.  The role of diffusion in enzyme kinetics.

Authors:  J M Schurr
Journal:  Biophys J       Date:  1970-08       Impact factor: 4.033

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Authors:  D Shoup; G Lipari; A Szabo
Journal:  Biophys J       Date:  1981-12       Impact factor: 4.033

10.  Divalent ions and the surface potential of charged phospholipid membranes.

Authors:  S G McLaughlin; G Szabo; G Eisenman
Journal:  J Gen Physiol       Date:  1971-12       Impact factor: 4.086

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  8 in total

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Authors:  Elif Ozkirimli; Shalini S Yadav; W Todd Miller; Carol Beth Post
Journal:  Protein Sci       Date:  2008-08-07       Impact factor: 6.725

2.  Signal transduction at point-blank range: analysis of a spatial coupling mechanism for pathway crosstalk.

Authors:  Michael I Monine; Jason M Haugh
Journal:  Biophys J       Date:  2008-05-23       Impact factor: 4.033

3.  The role of nonbonded interactions in the conformational dynamics of organophosphorous hydrolase adsorbed onto functionalized mesoporous silica surfaces.

Authors:  Diego E B Gomes; Roberto D Lins; Pedro G Pascutti; Chenghong Lei; Thereza A Soares
Journal:  J Phys Chem B       Date:  2010-01-14       Impact factor: 2.991

4.  Diffusion control in biochemical specificity.

Authors:  Jose L Alejo; Christopher P Kempes; Katarzyna P Adamala
Journal:  Biophys J       Date:  2022-03-09       Impact factor: 3.699

5.  Cardiolipin mediates membrane and channel interactions of the mitochondrial TIM23 protein import complex receptor Tim50.

Authors:  Ketan Malhotra; Arnab Modak; Shivangi Nangia; Tyler H Daman; Umut Gunsel; Victoria L Robinson; Dejana Mokranjac; Eric R May; Nathan N Alder
Journal:  Sci Adv       Date:  2017-09-01       Impact factor: 14.136

6.  Dissociation rate compensation mechanism for budding yeast pioneer transcription factors.

Authors:  Benjamin T Donovan; Hengye Chen; Caroline Jipa; Lu Bai; Michael G Poirier
Journal:  Elife       Date:  2019-03-19       Impact factor: 8.140

7.  An electrochemical biosensor for the detection of epithelial-mesenchymal transition.

Authors:  Xin Du; Zhenhua Zhang; Xiaodi Zheng; Hongyan Zhang; Dan Dong; Zhenguo Zhang; Min Liu; Jun Zhou
Journal:  Nat Commun       Date:  2020-01-10       Impact factor: 14.919

8.  High-Speed Lateral Flow Strategy for a Fast Biosensing with an Improved Selectivity and Binding Affinity.

Authors:  Dong Guk Cho; Haneul Yoo; Haein Lee; Yeol Kyo Choi; Minju Lee; Dong June Ahn; Seunghun Hong
Journal:  Sensors (Basel)       Date:  2018-05-10       Impact factor: 3.576

  8 in total

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