Literature DB >> 8421673

Protein folding--what's the question?

E E Lattman1, G D Rose.   

Abstract

The folding reactions of many small, globular proteins exhibit two-state kinetics, in which the folded and unfolded states interconvert readily without observable intermediates. Typically, the free energy difference, delta G, between the native and denatured states of such a protein is quite small, lying in the range of approximately -5 to -15 kcal/mol. We point out that, under these circumstances, a population of native-like molecules will persist, even in the presence of mutations sufficiently destabilizing to change the sign of delta G. Therefore, it is not energy per se that determines conformation. A corollary to this argument is that specificity--not stability--would be the more informative focus in future folding studies.

Mesh:

Year:  1993        PMID: 8421673      PMCID: PMC45678          DOI: 10.1073/pnas.90.2.439

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

Review 1.  Conformational stability of globular proteins.

Authors:  C N Pace
Journal:  Trends Biochem Sci       Date:  1990-01       Impact factor: 13.807

2.  Influence of interior packing and hydrophobicity on the stability of a protein.

Authors:  W S Sandberg; T C Terwilliger
Journal:  Science       Date:  1989-07-07       Impact factor: 47.728

3.  Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes.

Authors:  J W Ponder; F M Richards
Journal:  J Mol Biol       Date:  1987-02-20       Impact factor: 5.469

4.  Mapping the transition state and pathway of protein folding by protein engineering.

Authors:  A Matouschek; J T Kellis; L Serrano; A R Fersht
Journal:  Nature       Date:  1989-07-13       Impact factor: 49.962

5.  Genetic and structural analysis of the protein stability problem.

Authors:  B W Matthews
Journal:  Biochemistry       Date:  1987-11-03       Impact factor: 3.162

6.  Amino acid preferences for specific locations at the ends of alpha helices.

Authors:  J S Richardson; D C Richardson
Journal:  Science       Date:  1988-06-17       Impact factor: 47.728

Review 7.  Protein denaturation.

Authors:  C Tanford
Journal:  Adv Protein Chem       Date:  1968

8.  Tests of the helix dipole model for stabilization of alpha-helices.

Authors:  K R Shoemaker; P S Kim; E J York; J M Stewart; R L Baldwin
Journal:  Nature       Date:  1987 Apr 9-15       Impact factor: 49.962

9.  Helix signals in proteins.

Authors:  L G Presta; G D Rose
Journal:  Science       Date:  1988-06-17       Impact factor: 47.728

10.  Probing steric and hydrophobic effects on enzyme-substrate interactions by protein engineering.

Authors:  D A Estell; T P Graycar; J V Miller; D B Powers; J A Wells; J P Burnier; P G Ng
Journal:  Science       Date:  1986-08-08       Impact factor: 47.728

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  48 in total

1.  A physical basis for protein secondary structure.

Authors:  R Srinivasan; G D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  CKAAPs DB: a conserved key amino acid positions database.

Authors:  W W Li; B V Reddy; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  Lysozyme among the Lilliputians.

Authors:  G D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

4.  Sequence variations within protein families are linearly related to structural variations.

Authors:  Patrice Koehl; Michael Levitt
Journal:  J Mol Biol       Date:  2002-10-25       Impact factor: 5.469

5.  A simple model for polyproline II structure in unfolded states of alanine-based peptides.

Authors:  Rohit V Pappu; George D Rose
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

6.  FlgM gains structure in living cells.

Authors:  Matthew M Dedmon; Chetan N Patel; Gregory B Young; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

7.  Amphiphilic α-helical potential: a putative folding motif adding few constraints to protein evolution.

Authors:  S Y Ryan Lee; William Parker
Journal:  J Mol Evol       Date:  2011-10-30       Impact factor: 2.395

8.  A thermodynamic definition of protein domains.

Authors:  Lauren L Porter; George D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-25       Impact factor: 11.205

Review 9.  A backbone-based theory of protein folding.

Authors:  George D Rose; Patrick J Fleming; Jayanth R Banavar; Amos Maritan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

10.  Probing weakly polar interactions in cytochrome c.

Authors:  D S Auld; G B Young; A J Saunders; D F Doyle; S F Betz; G J Pielak
Journal:  Protein Sci       Date:  1993-12       Impact factor: 6.725

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