Literature DB >> 8415724

High-mobility-group 1 protein mediates DNA bending as determined by ring closures.

P M Pil1, C S Chow, S J Lippard.   

Abstract

High-mobility-group 1 protein (HMG1) is an abundant eukaryotic DNA-binding protein, the cellular role of which remains ill-defined. To test the ability of HMG1 itself to mediate curvature in double-stranded DNA, we examined its effect on the phage T4 DNA ligase-dependent cyclization of short DNA fragments. HMG1 caused circle formation for fragments > or = 87 bp. Fragments of 123, 100, 92, and 87 bp did not cyclize in the absence of protein but formed covalently closed circular monomers efficiently in the presence of HMG1, indicating that the protein is capable of introducing bends into the duplex. The bending activity was maintained by a 79-amino acid polypeptide corresponding to a single HMG-box domain of HMG1. The binding affinity for the DNA minicircle was greater than for the corresponding linear fragment. These findings indicate that the role of HMG1 could involve both structure-specific recognition of prebent DNA and distortion of the DNA helix by bending and that the HMG-box domain may actually be responsible for this activity.

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Year:  1993        PMID: 8415724      PMCID: PMC47589          DOI: 10.1073/pnas.90.20.9465

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  HMG1-related DNA-binding protein isolated with V-(D)-J recombination signal probes.

Authors:  M Shirakata; K Hüppi; S Usuda; K Okazaki; K Yoshida; H Sakano
Journal:  Mol Cell Biol       Date:  1991-09       Impact factor: 4.272

2.  DNA bending induced by Cro protein binding as demonstrated by gel electrophoresis.

Authors:  Y Lyubchenko; L Shlyakhtenko; B Chernov; R E Harrington
Journal:  Proc Natl Acad Sci U S A       Date:  1991-06-15       Impact factor: 11.205

3.  Fluorescence energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules.

Authors:  A I Murchie; R M Clegg; E von Kitzing; D R Duckett; S Diekmann; D M Lilley
Journal:  Nature       Date:  1989-10-26       Impact factor: 49.962

4.  DNA bending induced by the catabolite activator protein allows ring formation of a 144 bp DNA.

Authors:  D Dripps; R M Wartell
Journal:  J Biomol Struct Dyn       Date:  1987-08

5.  Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins.

Authors:  H M Jantzen; A Admon; S P Bell; R Tjian
Journal:  Nature       Date:  1990-04-26       Impact factor: 49.962

6.  Isolation and characterization of human cDNA clones encoding a high mobility group box protein that recognizes structural distortions to DNA caused by binding of the anticancer agent cisplatin.

Authors:  S L Bruhn; P M Pil; J M Essigmann; D E Housman; S J Lippard
Journal:  Proc Natl Acad Sci U S A       Date:  1992-03-15       Impact factor: 11.205

7.  DNA unwinding produced by site-specific intrastrand cross-links of the antitumor drug cis-diamminedichloroplatinum(II).

Authors:  S F Bellon; J H Coleman; S J Lippard
Journal:  Biochemistry       Date:  1991-08-13       Impact factor: 3.162

8.  Production of functional rat HMG1 protein in Escherichia coli.

Authors:  M E Bianchi
Journal:  Gene       Date:  1991-08-15       Impact factor: 3.688

9.  The DNA binding site of HMG1 protein is composed of two similar segments (HMG boxes), both of which have counterparts in other eukaryotic regulatory proteins.

Authors:  M E Bianchi; L Falciola; S Ferrari; D M Lilley
Journal:  EMBO J       Date:  1992-03       Impact factor: 11.598

10.  A gene from the human sex-determining region encodes a protein with homology to a conserved DNA-binding motif.

Authors:  A H Sinclair; P Berta; M S Palmer; J R Hawkins; B L Griffiths; M J Smith; J W Foster; A M Frischauf; R Lovell-Badge; P N Goodfellow
Journal:  Nature       Date:  1990-07-19       Impact factor: 49.962

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  67 in total

1.  The RAG1 homeodomain recruits HMG1 and HMG2 to facilitate recombination signal sequence binding and to enhance the intrinsic DNA-bending activity of RAG1-RAG2.

Authors:  V Aidinis; T Bonaldi; M Beltrame; S Santagata; M E Bianchi; E Spanopoulou
Journal:  Mol Cell Biol       Date:  1999-10       Impact factor: 4.272

2.  Interaction of nuclear proteins with intrinsically curved DNA in a matrix attachment region of a tobacco gene.

Authors:  Y Fukuda
Journal:  Plant Mol Biol       Date:  2000-09       Impact factor: 4.076

3.  The DNA-bending protein HMGB1 is a cellular cofactor of Sleeping Beauty transposition.

Authors:  Hatem Zayed; Zsuzsanna Izsvák; Dheeraj Khare; Udo Heinemann; Zoltán Ivics
Journal:  Nucleic Acids Res       Date:  2003-05-01       Impact factor: 16.971

4.  Visualization of hemiknot DNA structure with an atomic force microscope.

Authors:  Yuri L Lyubchenko; Luda S Shlyakhtenko; Melinda Binus; Claire Gaillard; François Strauss
Journal:  Nucleic Acids Res       Date:  2002-11-15       Impact factor: 16.971

5.  Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding.

Authors:  F H Allain; Y M Yen; J E Masse; P Schultze; T Dieckmann; R C Johnson; J Feigon
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

6.  Efficient specific DNA binding by p53 requires both its central and C-terminal domains as revealed by studies with high-mobility group 1 protein.

Authors:  Kristine McKinney; Carol Prives
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

7.  New peptide inhibitors of type IB topoisomerases: similarities and differences vis-a-vis inhibitors of tyrosine recombinases.

Authors:  David F Fujimoto; Clemencia Pinilla; Anca M Segall
Journal:  J Mol Biol       Date:  2006-08-24       Impact factor: 5.469

8.  High mobility group chromosomal protein 1 binds to the adeno-associated virus replication protein (Rep) and promotes Rep-mediated site-specific cleavage of DNA, ATPase activity and transcriptional repression.

Authors:  E Costello; P Saudan; E Winocour; L Pizer; P Beard
Journal:  EMBO J       Date:  1997-10-01       Impact factor: 11.598

9.  Enhancement of DNA flexibility in vitro and in vivo by HMGB box A proteins carrying box B residues.

Authors:  Nadia T Sebastian; Emily M Bystry; Nicole A Becker; L James Maher
Journal:  Biochemistry       Date:  2009-03-17       Impact factor: 3.162

10.  Concerted integration of linear retroviral DNA by the avian sarcoma virus integrase in vitro: dependence on both long terminal repeat termini.

Authors:  A Aiyar; P Hindmarsh; A M Skalka; J Leis
Journal:  J Virol       Date:  1996-06       Impact factor: 5.103

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