Literature DB >> 8400829

Prospects for NMR of large proteins.

G Wagner1.   

Abstract

During the last decade, solution structures of many small proteins have been solved by NMR. The size of proteins that are being analyzed by NMR seems to increase steadily. Protein structures up to 18 kD have been solved so far, and spectra of proteins up to 30 kD have been assigned. Thus, NMR emerges as an attractive technique, in particular for structural studies of proteins that cannot by crystallized. However, the application of the technology is limited by relaxation properties of the proteins. If relaxation would only be determined by Stokes-Einstein-type rotational diffusion, the effects of the molecular size on relaxation properties of proteins and thus on the performance of multi-dimensional multiple-resonance experiments could readily be estimated. From this perspective, solving two- or three-fold larger structures seems possible. However, most larger proteins exhibit serious line broadening due to aggregation or other still unknown effects. Sample conditioning to minimize these effects is presently the challenge in the work with large proteins.

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Year:  1993        PMID: 8400829     DOI: 10.1007/bf00176005

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  13 in total

1.  DNA recognition by GAL4: structure of a protein-DNA complex.

Authors:  R Marmorstein; M Carey; M Ptashne; S C Harrison
Journal:  Nature       Date:  1992-04-02       Impact factor: 49.962

2.  Efficient analysis of protein 2D NMR spectra using the software package EASY.

Authors:  C Eccles; P Güntert; M Billeter; K Wüthrich
Journal:  J Biomol NMR       Date:  1991-07       Impact factor: 2.835

3.  Solution structure of the DNA-binding domain of Cd2-GAL4 from S. cerevisiae.

Authors:  J D Baleja; R Marmorstein; S C Harrison; G Wagner
Journal:  Nature       Date:  1992-04-02       Impact factor: 49.962

4.  High-resolution three-dimensional structure of interleukin 1 beta in solution by three- and four-dimensional nuclear magnetic resonance spectroscopy.

Authors:  G M Clore; P T Wingfield; A M Gronenborn
Journal:  Biochemistry       Date:  1991-03-05       Impact factor: 3.162

5.  1H, 13C, and 15N NMR backbone assignments and secondary structure of human interferon-gamma.

Authors:  S Grzesiek; H Döbeli; R Gentz; G Garotta; A M Labhardt; A Bax
Journal:  Biochemistry       Date:  1992-09-08       Impact factor: 3.162

6.  Mapping of the spectral densities of N-H bond motions in eglin c using heteronuclear relaxation experiments.

Authors:  J W Peng; G Wagner
Journal:  Biochemistry       Date:  1992-09-15       Impact factor: 3.162

7.  NMR sequential assignment of Escherichia coli thioredoxin utilizing random fractional deuteriation.

Authors:  D M LeMaster; F M Richards
Journal:  Biochemistry       Date:  1988-01-12       Impact factor: 3.162

8.  Low resolution solution structure of the Bacillus subtilis glucose permease IIA domain derived from heteronuclear three-dimensional NMR spectroscopy.

Authors:  W J Fairbrother; G P Gippert; J Reizer; M H Saier; P E Wright
Journal:  FEBS Lett       Date:  1992-01-20       Impact factor: 4.124

9.  Sequence-specific 1H and 15N resonance assignments for human dihydrofolate reductase in solution.

Authors:  B J Stockman; N R Nirmala; G Wagner; T J Delcamp; M T DeYarman; J H Freisheim
Journal:  Biochemistry       Date:  1992-01-14       Impact factor: 3.162

10.  Transforming growth factor beta 1: NMR signal assignments of the recombinant protein expressed and isotopically enriched using Chinese hamster ovary cells.

Authors:  S J Archer; A Bax; A B Roberts; M B Sporn; Y Ogawa; K A Piez; J A Weatherbee; M L Tsang; R Lucas; B L Zheng
Journal:  Biochemistry       Date:  1993-02-02       Impact factor: 3.162

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  27 in total

1.  The NMR structure of the 47-kDa dimeric enzyme 3,4-dihydroxy-2-butanone-4-phosphate synthase and ligand binding studies reveal the location of the active site.

Authors:  M J Kelly; L J Ball; C Krieger; Y Yu; M Fischer; S Schiffmann; P Schmieder; R Kühne; W Bermel; A Bacher; G Richter; H Oschkinat
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-30       Impact factor: 11.205

2.  A novel strategy for the assignment of side-chain resonances in completely deuterated large proteins using 13C spectroscopy.

Authors:  Alexander Eletsky; Osvaldo Moreira; Helena Kovacs; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

3.  Gradient and sensitivity enhancement of 2D TROSY with water flip-back, 3D NOESY-TROSY and TOCSY-TROSY experiments.

Authors:  G Zhu; X M Kong; K H Sze
Journal:  J Biomol NMR       Date:  1999-01       Impact factor: 2.835

4.  Solution structure of (gamma)S-crystallin by molecular fragment replacement NMR.

Authors:  Zhengrong Wu; Frank Delaglio; Keith Wyatt; Graeme Wistow; Ad Bax
Journal:  Protein Sci       Date:  2005-10-31       Impact factor: 6.725

5.  Structure and interdomain dynamics of apoptosis-associated speck-like protein containing a CARD (ASC).

Authors:  Eva de Alba
Journal:  J Biol Chem       Date:  2009-09-15       Impact factor: 5.157

6.  Microdrop screening: a rapid method to optimize solvent conditions for NMR spectroscopy of proteins.

Authors:  C A Lepre; J M Moore
Journal:  J Biomol NMR       Date:  1998-11       Impact factor: 2.835

7.  The solution structure of ribosomal protein S4 delta41 reveals two subdomains and a positively charged surface that may interact with RNA.

Authors:  M A Markus; R B Gerstner; D E Draper; D A Torchia
Journal:  EMBO J       Date:  1998-08-17       Impact factor: 11.598

8.  Refocusing revisited: an optimized, gradient-enhanced refocused HSQC and its applications in 2D and 3D NMR and in deuterium exchange experiments.

Authors:  J H Davis
Journal:  J Biomol NMR       Date:  1995-06       Impact factor: 2.835

9.  Combined use of 13C chemical shift and 1H alpha-13C alpha heteronuclear NOE data in monitoring a protein NMR structure refinement.

Authors:  B Celda; C Biamonti; M J Arnau; R Tejero; G T Montelione
Journal:  J Biomol NMR       Date:  1995-02       Impact factor: 2.835

10.  Carbonyl carbon label selective (CCLS) 1H-15N HSQC experiment for improved detection of backbone 13C-15N cross peaks in larger proteins.

Authors:  Marco Tonelli; Larry R Masterson; Klaas Hallenga; Gianluigi Veglia; John L Markley
Journal:  J Biomol NMR       Date:  2007-09-09       Impact factor: 2.835

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