Literature DB >> 8380333

Destabilizing effects of replacing a surface lysine of cytochrome c with aromatic amino acids: implications for the denatured state.

B E Bowler1, K May, T Zaragoza, P York, A Dong, W S Caughey.   

Abstract

A series of mutations at the highly solvent-exposed lysine 73 of iso-1-cytochrome c have been prepared by site-directed mutagenesis. These mutations were designed to probe denatured-state effects on the unfolding equilibrium of this protein. The hydrophilic amino acid Lys was replaced with the hydrophobic amino acids Met, Tyr, Phe, and Trp. The idea was to induce stabilizing hydrophobic interactions in the unfolded state, while having little effect on the folded-state energy due to the high solvent exposure of this site. Fourier transform infrared spectral analyses indicate that none of these mutations significantly affect the native fold of the protein. The stability of each protein to guanidine hydrochloride denaturation was monitored at 25 degrees C by circular dichroism spectroscopy. All four hydrophobic mutants decreased the value of delta Go uH2O, the free energy of unfolding of the protein in the absence of denaturant, by 1.0-1.5 kcal/mol. The delta Go uH2O values for these proteins correlate linearly (correlation coefficient of 0.98) with the hydrophobicity of the amino acid at position 73 of the sequence. These data are consistent with the idea that the position-73 mutants are more buried in the denatured state than in the native state, suggestive of a compact denatured state where such interactions would be possible.

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Year:  1993        PMID: 8380333     DOI: 10.1021/bi00052a024

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  29 in total

1.  Increasing protein stability by altering long-range coulombic interactions.

Authors:  G R Grimsley; K L Shaw; L R Fee; R W Alston; B M Huyghues-Despointes; R L Thurlkill; J M Scholtz; C N Pace
Journal:  Protein Sci       Date:  1999-09       Impact factor: 6.725

2.  Antibody-detected folding: kinetics of surface epitope formation are distinct from other folding phases.

Authors:  C S Raman; R Jemmerson; B T Nall
Journal:  Protein Sci       Date:  2000-01       Impact factor: 6.725

3.  Unspecific hydrophobic stabilization of folding transition states.

Authors:  Ana Rosa Viguera; Cristina Vega; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

4.  Amino-acid substitutions at the fully exposed P1 site of bovine pancreatic trypsin inhibitor affect its stability.

Authors:  D Krowarsch; J Otlewski
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

5.  Estimation of the compaction of the denatured state by a protein variant involved in a reverse hydrophobic effect.

Authors:  Miao-Miao Zhang; Christine D Ford; Bruce E Bowler
Journal:  Protein J       Date:  2004-02       Impact factor: 2.371

6.  Tolerance of a protein to multiple polar-to-hydrophobic surface substitutions.

Authors:  M H Cordes; R T Sauer
Journal:  Protein Sci       Date:  1999-02       Impact factor: 6.725

7.  Role of protein stabilizers on the conformation of the unfolded state of cytochrome c and its early folding kinetics: investigation at single molecular resolution.

Authors:  Shubhasis Haldar; Samaresh Mitra; Krishnananda Chattopadhyay
Journal:  J Biol Chem       Date:  2010-06-10       Impact factor: 5.157

8.  Determination of intrinsic hydrophilicity/hydrophobicity of amino acid side chains in peptides in the absence of nearest-neighbor or conformational effects.

Authors:  James M Kovacs; Colin T Mant; Robert S Hodges
Journal:  Biopolymers       Date:  2006       Impact factor: 2.505

9.  Cytochrome c impaled: investigation of the extended lipid anchorage of a soluble protein to mitochondrial membrane models.

Authors:  Erta Kalanxhi; Carmichael J A Wallace
Journal:  Biochem J       Date:  2007-10-15       Impact factor: 3.857

10.  Electron-electron distances in spin-labeled low-spin metmyoglobin variants by relaxation enhancement.

Authors:  Dmitriy Ulyanov; Bruce E Bowler; Gareth R Eaton; Sandra S Eaton
Journal:  Biophys J       Date:  2008-09-05       Impact factor: 4.033

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