Literature DB >> 8341648

Preferential and asymmetric interaction of linker histones with 5S DNA in the nucleosome.

J J Hayes1, A P Wolffe.   

Abstract

We establish that linker histones H1 and H5 bind preferentially to a Xenopus borealis somatic 5S RNA gene associated with an octamer of core histones rather than to naked 5S DNA. This preferential binding requires free linker DNA to either side of the nucleosome core. Incorporation of a single linker histone molecule into the nucleosome protects an additional 20 bp of linker DNA from micrococcal nuclease digestion. This additional DNA is asymmetrically distributed with respect to the nucleosome core. Incorporation of linker histones causes no change to the cleavage of DNA in the nucleosome by hydroxyl radical or DNase I.

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Year:  1993        PMID： 8341648      PMCID： PMC46942          DOI： 10.1073/pnas.90.14.6415

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  34 in total

1.  Direct detection of linker DNA bending in defined-length oligomers of chromatin.

Authors:  J Yao; P T Lowary; J Widom
Journal:  Proc Natl Acad Sci U S A       Date:  1990-10       Impact factor: 11.205

2.  DNA and protein determinants of nucleosome positioning on sea urchin 5S rRNA gene sequences in vitro.

Authors:  F Dong; J C Hansen; K E van Holde
Journal:  Proc Natl Acad Sci U S A       Date:  1990-08       Impact factor: 11.205

3.  The structure of DNA in a nucleosome.

Authors:  J J Hayes; T D Tullius; A P Wolffe
Journal:  Proc Natl Acad Sci U S A       Date:  1990-10       Impact factor: 11.205

4.  Homogeneous reconstituted oligonucleosomes, evidence for salt-dependent folding in the absence of histone H1.

Authors:  J C Hansen; J Ausio; V H Stanik; K E van Holde
Journal:  Biochemistry       Date:  1989-11-14       Impact factor: 3.162

5.  Hydroxyl radical footprinting: a high-resolution method for mapping protein-DNA contacts.

Authors:  T D Tullius; B A Dombroski; M E Churchill; L Kam
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

6.  Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure.

Authors:  R T Simpson; F Thoma; J M Brubaker
Journal:  Cell       Date:  1985-10       Impact factor: 41.582

7.  A bacteriophage RNA polymerase transcribes through a Xenopus 5S RNA gene transcription complex without disrupting it.

Authors:  A P Wolffe; E Jordan; D D Brown
Journal:  Cell       Date:  1986-02-14       Impact factor: 41.582

8.  Salt-dependent co-operative interaction of histone H1 with linear DNA.

Authors:  D J Clark; J O Thomas
Journal:  J Mol Biol       Date:  1986-02-20       Impact factor: 5.469

9.  Footprinting of linker histones H5 and H1 on the nucleosome.

Authors:  D Z Staynov; C Crane-Robinson
Journal:  EMBO J       Date:  1988-12-01       Impact factor: 11.598

10.  Asymmetry and polarity of nucleosomes in chicken erythrocyte chromatin.

Authors:  S C Satchwell; A A Travers
Journal:  EMBO J       Date:  1989-01       Impact factor: 11.598
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  42 in total

1.  DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure.

Authors:  D Z Staynov
Journal:  Nucleic Acids Res       Date:  2000-08-15       Impact factor: 16.971

Review 2.  Methods for the analysis of protein-chromatin interactions.

Authors:  Sarah J Brickwood; Fiona A Myers; Simon P Chandler
Journal:  Mol Biotechnol       Date:  2002-01       Impact factor: 2.695

3.  Linker histone variants control chromatin dynamics during early embryogenesis.

Authors:  Hideaki Saeki; Keita Ohsumi; Hitoshi Aihara; Takashi Ito; Susumu Hirose; Kiyoe Ura; Yasufumi Kaneda
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-08       Impact factor: 11.205

4.  MBD4-mediated glycosylase activity on a chromatin template is enhanced by acetylation.

Authors:  Toyotaka Ishibashi; Kevin So; Claire G Cupples; Juan Ausió
Journal:  Mol Cell Biol       Date:  2008-06-02       Impact factor: 4.272

5.  Linker histone protection of chromatosomes reconstituted on 5S rDNA from Xenopus borealis:a reinvestigation.

Authors:  W An; K van Holde; J Zlatanova
Journal:  Nucleic Acids Res       Date:  1998-09-01       Impact factor: 16.971

6.  In vitro chromatin remodelling by chromatin accessibility complex (CHRAC) at the SV40 origin of DNA replication.

Authors:  V Alexiadis; P D Varga-Weisz; E Bonte; P B Becker; C Gruss
Journal:  EMBO J       Date:  1998-06-15       Impact factor: 11.598

7.  Nucleosome linker DNA contacts and induces specific folding of the intrinsically disordered H1 carboxyl-terminal domain.

Authors:  Tamara L Caterino; He Fang; Jeffrey J Hayes
Journal:  Mol Cell Biol       Date:  2011-04-04       Impact factor: 4.272

8.  Linker histone protects linker DNA on only one side of the core particle and in a sequence-dependent manner.

Authors:  W An; S H Leuba; K van Holde; J Zlatanova
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-31       Impact factor: 11.205

9.  Prolonged glucocorticoid exposure dephosphorylates histone H1 and inactivates the MMTV promoter.

Authors:  H L Lee; T K Archer
Journal:  EMBO J       Date:  1998-03-02       Impact factor: 11.598

10.  Prothymosin alpha modulates the interaction of histone H1 with chromatin.

Authors:  Z Karetsou; R Sandaltzopoulos; M Frangou-Lazaridis; C Y Lai; O Tsolas; P B Becker; T Papamarcaki
Journal:  Nucleic Acids Res       Date:  1998-07-01       Impact factor: 16.971
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