Literature DB >> 2996776

Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure.

R T Simpson, F Thoma, J M Brubaker.   

Abstract

We describe a model system for study of chromatin structure at levels above that of the nucleosome. A series of fragments with lengths ranging from 172 to 207 bp tandemly repeated three to greater than 50 times was prepared; each repeat contains the region important in forming a positioned core particle on a sea urchin 5S rRNA gene upon in vitro association with histones. The tandemly repeated sequences can be studied as linear DNA fragments or as relaxed or supercoiled circular molecules. A number of criteria indicate that nucleosomes position correctly on all the tandemly repeated elements. Measurement of the change in linking number per core particle led to a value of -1.0. Both length and repeat number dependent changes in conformation of the nucleoproteins are observed. We discuss the possibility that some ordered higher level chromatin structure can form with DNA and core histones alone.

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Year:  1985        PMID: 2996776     DOI: 10.1016/0092-8674(85)90276-4

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  169 in total

1.  Remodeling of yeast CUP1 chromatin involves activator-dependent repositioning of nucleosomes over the entire gene and flanking sequences.

Authors:  C H Shen; B P Leblanc; J A Alfieri; D J Clark
Journal:  Mol Cell Biol       Date:  2001-01       Impact factor: 4.272

Review 2.  Role of histone acetylation in the assembly and modulation of chromatin structures.

Authors:  A T Annunziato; J C Hansen
Journal:  Gene Expr       Date:  2000

3.  Sir3-dependent assembly of supramolecular chromatin structures in vitro.

Authors:  P T Georgel; M A Palacios DeBeer; G Pietz; C A Fox; J C Hansen
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-10       Impact factor: 11.205

4.  GCN5 dependence of chromatin remodeling and transcriptional activation by the GAL4 and VP16 activation domains in budding yeast.

Authors:  G A Stafford; R H Morse
Journal:  Mol Cell Biol       Date:  2001-07       Impact factor: 4.272

Review 5.  Methods for the analysis of protein-chromatin interactions.

Authors:  Sarah J Brickwood; Fiona A Myers; Simon P Chandler
Journal:  Mol Biotechnol       Date:  2002-01       Impact factor: 2.695

6.  New insights into unwrapping DNA from the nucleosome from a single-molecule optical tweezers method.

Authors:  Jeffrey J Hayes; Jeffrey C Hansen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

7.  Rap1p and other transcriptional regulators can function in defining distinct domains of gene expression.

Authors:  Qun Yu; Runxiang Qiu; Travis B Foland; Dan Griesen; Carl S Galloway; Ya-Hui Chiu; Joseph Sandmeier; James R Broach; Xin Bi
Journal:  Nucleic Acids Res       Date:  2003-02-15       Impact factor: 16.971

8.  SWI/SNF-dependent long-range remodeling of yeast HIS3 chromatin.

Authors:  Yeonjung Kim; David J Clark
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-13       Impact factor: 11.205

9.  Circle ligation of in vitro assembled chromatin indicates a highly flexible structure.

Authors:  A Stein; Y Dalal; T J Fleury
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

10.  Chromatin condensing functions of the linker histone C-terminal domain are mediated by specific amino acid composition and intrinsic protein disorder.

Authors:  Xu Lu; Barbara Hamkalo; Missag H Parseghian; Jeffrey C Hansen
Journal:  Biochemistry       Date:  2009-01-13       Impact factor: 3.162

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