Literature DB >> 8332520

Compilation of DNA sequences of Escherichia coli (update 1993).

M Kröger1, R Wahl, P Rice.   

Abstract

We have compiled the DNA sequence data for E. coli available from the GENBANK and EMBL data libraries and over a period of several years independently from the literature. This is the fifth listing replacing and increasing the former listings substantially. However, in order to save space this printed version contains DNA sequence information only, if they are publically available in electronic form. The complete compilation including a full set of genetic map data and the E. coli protein index can be obtained in machine readable form from the EMBL data library (ECD release 15) as a part of the CD-ROM issue of the EMBL sequence database, released and updated every three months. After deletion of all detected overlaps a total of 2,353,635 individual bp is found to be determined till the end of April 1993. This corresponds to a total of 49.87% of the entire E. coli chromosome consisting of about 4,720 kbp. This number may actually be higher by 9161 bp derived from other strains of E. coli.

Entities:  

Mesh:

Substances:

Year:  1993        PMID: 8332520      PMCID: PMC309723          DOI: 10.1093/nar/21.13.2973

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  25 in total

1.  Cosmid-derived map of E. coli strain BHB2600 in comparison to the map of strain W3110.

Authors:  R P Birkenbihl; W Vielmetter
Journal:  Nucleic Acids Res       Date:  1989-07-11       Impact factor: 16.971

2.  The EMBL Network File Server.

Authors:  P J Stoehr; R A Omond
Journal:  Nucleic Acids Res       Date:  1989-08-25       Impact factor: 16.971

3.  Completion of the detailed restriction map of the E. coli genome by the isolation of overlapping cosmid clones.

Authors:  V Knott; D J Blake; G G Brownlee
Journal:  Nucleic Acids Res       Date:  1989-08-11       Impact factor: 16.971

4.  Compilation of E. coli mRNA promoter sequences.

Authors:  S Lisser; H Margalit
Journal:  Nucleic Acids Res       Date:  1993-04-11       Impact factor: 16.971

5.  Mapping of sequenced genes (700 kbp) in the restriction map of the Escherichia coli chromosome.

Authors:  C Médigue; J P Bouché; A Hénaut; A Danchin
Journal:  Mol Microbiol       Date:  1990-02       Impact factor: 3.501

6.  Alignment of Escherichia coli K12 DNA sequences to a genomic restriction map.

Authors:  K E Rudd; W Miller; J Ostell; D A Benson
Journal:  Nucleic Acids Res       Date:  1990-01-25       Impact factor: 16.971

7.  Compilation of DNA sequences of Escherichia coli (update 1990).

Authors:  M Kröger; R Wahl; P Rice
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

8.  Complete maps of IS1, IS2, IS3, IS4, IS5, IS30 and IS150 locations in Escherichia coli K12.

Authors:  R P Birkenbihl; W Vielmetter
Journal:  Mol Gen Genet       Date:  1989-12

9.  Mapping of insertion elements IS1, IS2 and IS3 on the Escherichia coli K-12 chromosome. Role of the insertion elements in formation of Hfrs and F' factors and in rearrangement of bacterial chromosomes.

Authors:  M Umeda; E Ohtsubo
Journal:  J Mol Biol       Date:  1989-08-20       Impact factor: 5.469

10.  The gene-protein database of Escherichia coli: edition 5.

Authors:  R A VanBogelen; P Sankar; R L Clark; J A Bogan; F C Neidhardt
Journal:  Electrophoresis       Date:  1992-12       Impact factor: 3.535

View more
  12 in total

1.  A hidden Markov model that finds genes in E. coli DNA.

Authors:  A Krogh; I S Mian; D Haussler
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

2.  Isolation of cmr, a novel Escherichia coli chloramphenicol resistance gene encoding a putative efflux pump.

Authors:  I W Nilsen; I Bakke; A Vader; O Olsvik; M R El-Gewely
Journal:  J Bacteriol       Date:  1996-06       Impact factor: 3.490

3.  Compilation of DNA sequences of Escherichia coli K12: description of the interactive databases ECD and ECDC (update 1996).

Authors:  M Kröger; R Wahl
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

Review 4.  Physical mapping of bacterial genomes.

Authors:  M Fonstein; R Haselkorn
Journal:  J Bacteriol       Date:  1995-06       Impact factor: 3.490

5.  The European Bioinformatics Institute (EBI) databases.

Authors:  D B Emmert; P J Stoehr; G Stoesser; G N Cameron
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

6.  Global analysis of proteins synthesized during phosphorus restriction in Escherichia coli.

Authors:  R A VanBogelen; E R Olson; B L Wanner; F C Neidhardt
Journal:  J Bacteriol       Date:  1996-08       Impact factor: 3.490

7.  Identification and chromosomal distribution of DNA sequence segments conserved since divergence of Escherichia coli and Bacillus subtilis.

Authors:  T Kunisawa
Journal:  J Mol Evol       Date:  1995-06       Impact factor: 2.395

8.  ECD--a totally integrated database of Escherichia coli K12.

Authors:  R Wahl; P Rice; C M Rice; M Kröger
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

9.  Compilation of DNA sequences of Escherichia coli K12 (ECD and ECDC; update 1995).

Authors:  M Kröger; R Wahl
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

10.  Intrinsic and extrinsic approaches for detecting genes in a bacterial genome.

Authors:  M Borodovsky; K E Rudd; E V Koonin
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.