Literature DB >> 8185922

From field to film: rapid sequencing methods for field-collected plant species.

D L Nickrent1.   

Abstract

Methods that have proven effective in the rapid extraction of plant DNA, PCR amplification and sequencing of ribosomal and chloroplast genes are presented. Techniques that can be used under field conditions to preserve DNA for subsequent extraction are reviewed. Tissues that are fresh, heat-desiccated, silica gel-desiccated and cetyltrimethylammonium bromide (CTAB) buffer preserved are compared for DNA quality and quantity. The "delayed CTAB" method yields high molecular weight DNA, thereby providing an alternative to preservation using silica gel. Optimized methodologies for PCR amplification and double-stranded sequencing of the product are detailed including gel purification of PCR products using DEAE membranes.

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Year:  1994        PMID: 8185922

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  13 in total

1.  Do nonasterid holoparasitic flowering plants have plastid genomes?

Authors:  D L Nickrent; Y Ouyang; R J Duff; C W dePamphilis
Journal:  Plant Mol Biol       Date:  1997-07       Impact factor: 4.076

2.  Structural analyses of plastid-derived 16S rRNAs in holoparasitic angiosperms.

Authors:  D L Nickrent; R J Duff; D A Konings
Journal:  Plant Mol Biol       Date:  1997-07       Impact factor: 4.076

3.  Alternate paths of evolution for the photosynthetic gene rbcL in four nonphotosynthetic species of Orobanche.

Authors:  A D Wolfe; C W dePamphilis
Journal:  Plant Mol Biol       Date:  1997-04       Impact factor: 4.076

4.  Overexpression of plastidic maize NADP-malate dehydrogenase (ZmNADP-MDH) in Arabidopsis thaliana confers tolerance to salt stress.

Authors:  Deepika Kandoi; Sasmita Mohanty; Baishnab C Tripathy
Journal:  Protoplasma       Date:  2017-09-24       Impact factor: 3.356

5.  Towards efficient photosynthesis: overexpression of Zea mays phosphoenolpyruvate carboxylase in Arabidopsis thaliana.

Authors:  Deepika Kandoi; Sasmita Mohanty; Baishnab C Tripathy
Journal:  Photosynth Res       Date:  2016-02-20       Impact factor: 3.573

6.  High rates of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants.

Authors:  D L Nickrent; E M Starr
Journal:  J Mol Evol       Date:  1994-07       Impact factor: 2.395

7.  Extensive intraindividual variation in plastid rDNA sequences from the holoparasite Cynomorium coccineum (Cynomoriaceae).

Authors:  Miguel A García; Erica H Nicholson; Daniel L Nickrent
Journal:  J Mol Evol       Date:  2004-03       Impact factor: 2.395

Review 8.  DNA banking for plant breeding, biotechnology and biodiversity evaluation.

Authors:  Trevor R Hodkinson; Stephen Waldren; John A N Parnell; Colin T Kelleher; Karine Salamin; Nicolas Salamin
Journal:  J Plant Res       Date:  2007-02-02       Impact factor: 3.000

9.  Discovery of the photosynthetic relatives of the "Maltese mushroom" Cynomorium.

Authors:  Daniel L Nickrent; Joshua P Der; Frank E Anderson
Journal:  BMC Evol Biol       Date:  2005-06-21       Impact factor: 3.260

10.  Phylogenetic inference in Rafflesiales: the influence of rate heterogeneity and horizontal gene transfer.

Authors:  Daniel L Nickrent; Albert Blarer; Yin-Long Qiu; Romina Vidal-Russell; Frank E Anderson
Journal:  BMC Evol Biol       Date:  2004-10-20       Impact factor: 3.260

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