Literature DB >> 17273892

DNA banking for plant breeding, biotechnology and biodiversity evaluation.

Trevor R Hodkinson1, Stephen Waldren, John A N Parnell, Colin T Kelleher, Karine Salamin, Nicolas Salamin.   

Abstract

The manipulation of DNA is routine practice in botanical research and has made a huge impact on plant breeding, biotechnology and biodiversity evaluation. DNA is easy to extract from most plant tissues and can be stored for long periods in DNA banks. Curation methods are well developed for other botanical resources such as herbaria, seed banks and botanic gardens, but procedures for the establishment and maintenance of DNA banks have not been well documented. This paper reviews the curation of DNA banks for the characterisation and utilisation of biodiversity and provides guidelines for DNA bank management. It surveys existing DNA banks and outlines their operation. It includes a review of plant DNA collection, preservation, isolation, storage, database management and exchange procedures. We stress that DNA banks require full integration with existing collections such as botanic gardens, herbaria and seed banks, and information retrieval systems that link such facilities, bioinformatic resources and other DNA banks. They also require efficient and well-regulated sample exchange procedures. Only with appropriate curation will maximum utilisation of DNA collections be achieved.

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Year:  2007        PMID: 17273892     DOI: 10.1007/s10265-006-0059-7

Source DB:  PubMed          Journal:  J Plant Res        ISSN: 0918-9440            Impact factor:   3.000


  38 in total

1.  Arabidopsis thaliana genome. A green chapter in the book of life.

Authors:  V Walbot
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

Review 2.  Advances in plant biotechnology and its adoption in developing countries.

Authors:  Gary H Toenniessen; John C O'Toole; Joseph DeVries
Journal:  Curr Opin Plant Biol       Date:  2003-04       Impact factor: 7.834

3.  Environment. Biodiversity update--progress in taxonomy.

Authors:  Stephen Blackmore
Journal:  Science       Date:  2002-10-11       Impact factor: 47.728

Review 4.  The challenge of constructing large phylogenetic trees.

Authors:  Michael J Sanderson; Amy C Driskell
Journal:  Trends Plant Sci       Date:  2003-08       Impact factor: 18.313

5.  A plea for DNA banking.

Authors:  Vincent Savolainen; Gail Reeves
Journal:  Science       Date:  2004-06-04       Impact factor: 47.728

Review 6.  A new approach to the distribution and storage of genetic resources.

Authors:  Yoshihide Hayashizaki; Jun Kawai
Journal:  Nat Rev Genet       Date:  2004-03       Impact factor: 53.242

Review 7.  Land plants and DNA barcodes: short-term and long-term goals.

Authors:  Mark W Chase; Nicolas Salamin; Mike Wilkinson; James M Dunwell; Rao Prasad Kesanakurthi; Nadia Haider; Nadia Haidar; Vincent Savolainen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-10-29       Impact factor: 6.237

8.  Large-scale general collection of wild-plant DNA in Mustang, Nepal.

Authors:  Hirokazu Tsukaya; Yu Iokawa; Makiko Kondo; Hideaki Ohba
Journal:  J Plant Res       Date:  2005-02-03       Impact factor: 2.629

9.  Phylogenetic relationships in Pleurothallidinae (Orchidaceae): combined evidence from nuclear and plastid DNA sequences.

Authors:  A M Pridgeon; R Solano; M W Chase
Journal:  Am J Bot       Date:  2001-12       Impact factor: 3.844

10.  Phylogenetics of Miscanthus, Saccharum and related genera (Saccharinae, Andropogoneae, Poaceae) based on DNA sequences from ITS nuclear ribosomal DNA and plastid trnLintron and trnL-F intergenic spacers.

Authors:  Trevor R Hodkinson; Mark W Chase; M Dolores Lledó; Nicolas Salamin; Stephen A Renvoize
Journal:  J Plant Res       Date:  2002-08-28       Impact factor: 2.629

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  8 in total

1.  Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s.

Authors:  Sarawood Sungkaew; Chris M A Stapleton; Nicolas Salamin; Trevor R Hodkinson
Journal:  J Plant Res       Date:  2008-11-19       Impact factor: 2.629

2.  Biotechnological approaches for conservation and improvement of rare and endangered plants of Saudi Arabia.

Authors:  Salim Khan; Fahad Al-Qurainy; Mohammad Nadeem
Journal:  Saudi J Biol Sci       Date:  2011-11-28       Impact factor: 4.219

3.  Genetic diversity and floral width variation in introduced and native populations of a long-lived woody perennial.

Authors:  Jane C Stout; Karl J Duffy; Paul A Egan; Maeve Harbourne; Trevor R Hodkinson
Journal:  AoB Plants       Date:  2014-12-19       Impact factor: 3.276

4.  Dr. Roberto Miguel Klein Herbarium (FURB), Blumenau, Southern Brazil.

Authors:  André Luís de Gasper; Alexander Christian Vibrans; Luís Adriano Funez; Morilo José Rigon; Felipe Bittencourt; Carina Vieira
Journal:  PhytoKeys       Date:  2014-10-13       Impact factor: 1.635

5.  Complete chloroplast genome sequence of a major allogamous forage species, perennial ryegrass (Lolium perenne L.).

Authors:  Kerstin Diekmann; Trevor R Hodkinson; Kenneth H Wolfe; Rob van den Bekerom; Philip J Dix; Susanne Barth
Journal:  DNA Res       Date:  2009-05-04       Impact factor: 4.458

6.  An optimized chloroplast DNA extraction protocol for grasses (Poaceae) proves suitable for whole plastid genome sequencing and SNP detection.

Authors:  Kerstin Diekmann; Trevor R Hodkinson; Evelyn Fricke; Susanne Barth
Journal:  PLoS One       Date:  2008-07-30       Impact factor: 3.240

7.  Nuclear SSR markers for Miscanthus, Saccharum, and related grasses (Saccharinae, Poaceae).

Authors:  Trevor R Hodkinson; Mariateresa de Cesare; Susanne Barth
Journal:  Appl Plant Sci       Date:  2013-11-07       Impact factor: 1.936

8.  First Report of the Ash Sawfly, Tomostethus nigritus, Established on Fraxinus excelsior in the Republic of Ireland.

Authors:  Erika Soldi; Emma Fuller; Anna M M Tiley; Archie K Murchie; Trevor R Hodkinson
Journal:  Insects       Date:  2021-12-21       Impact factor: 2.769

  8 in total

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