Literature DB >> 8177878

Rapid crystallization of T4 lysozyme by intermolecular disulfide cross-linking.

D W Heinz1, B W Matthews.   

Abstract

In an attempt to facilitate crystallization, engineered cysteines were used to promote formation of a 'back-to-back' dimer that occurs in different crystal forms of wild-type and mutant T4 lysozymes. The designed double mutant, N68C/A93C, in which the surface residues Asn68 and Ala93 were replaced by cysteines, formed dimers in solution and crystallized isomorphously to wild-type, but at a much faster rate. Overall, the mutant structure remained very similar to wild-type despite the formation of two intermolecular disulfide bridges. The crystals of cross-linked dimers ahd thermal factors somewhat lower than wild-type, indicating reduced mobility, but did not diffract to noticeably higher resolution. Introduction of the same cross-links was also used to obtain crystals in a different space group of a T4 lysozyme mutant that could not be crystallized previously. The results suggest that the formation of the lysozyme dimer is a critical intermediate in the formation of more than one crystal form and that covalent cross-linking of the intermediate accelerates nucleation and facilitates crystal growth. The disulfide cross-links are located on the 'back' of the molecule and formation of the cross-linked dimer appears to leave the active sites completely unobstructed. Nevertheless, the cross-linked dimer is completely inactive. One explanation for this behavior is that the disulfide bridges prevent hinge-bending motion that may be required for catalysis. Another possibility is that the formation of the dimer increases the overall bulk of the enzyme and prevents its access to the susceptible glycosidic bonds within the cell wall substrate.

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Year:  1994        PMID: 8177878     DOI: 10.1093/protein/7.3.301

Source DB:  PubMed          Journal:  Protein Eng        ISSN: 0269-2139


  13 in total

1.  Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme.

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Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

2.  An approach to crystallizing proteins by synthetic symmetrization.

Authors:  D Rey Banatao; Duilio Cascio; Christopher S Crowley; Mark R Fleissner; Heather L Tienson; Todd O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-18       Impact factor: 11.205

3.  Cyclic oligomer design with de novo αβ-proteins.

Authors:  Yu-Ru Lin; Nobuyasu Koga; Sergey M Vorobiev; David Baker
Journal:  Protein Sci       Date:  2017-11       Impact factor: 6.725

4.  Site-directed spin labeling of a genetically encoded unnatural amino acid.

Authors:  Mark R Fleissner; Eric M Brustad; Tamás Kálai; Christian Altenbach; Duilio Cascio; Francis B Peters; Kálmán Hideg; Sebastian Peuker; Peter G Schultz; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-07       Impact factor: 11.205

5.  Introduction of a disulfide bond leads to stabilization and crystallization of a ricin immunogen.

Authors:  Jaimee R Compton; Patricia M Legler; Benjamin V Clingan; Mark A Olson; Charles B Millard
Journal:  Proteins       Date:  2011-01-05

6.  MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.

Authors:  Gilad Wainreb; Haim Ashkenazy; Yana Bromberg; Alina Starovolsky-Shitrit; Turkan Haliloglu; Eytan Ruppin; Karen B Avraham; Burkhard Rost; Nir Ben-Tal
Journal:  Nucleic Acids Res       Date:  2010-06-11       Impact factor: 16.971

7.  Polymer-driven crystallization.

Authors:  Sehat Nauli; Saman Farr; Yueh-Jung Lee; Hye-Yeon Kim; Salem Faham; James U Bowie
Journal:  Protein Sci       Date:  2007-11       Impact factor: 6.725

8.  Extending the usability of the phasing power of diselenide bonds: SeCys SAD phasing of CsgC using a non-auxotrophic strain.

Authors:  Paula S Salgado; Jonathan D Taylor; Ernesto Cota; Steve J Matthews
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-12-16

Review 9.  Principles and characteristics of biological assemblies in experimentally determined protein structures.

Authors:  Qifang Xu; Roland L Dunbrack
Journal:  Curr Opin Struct Biol       Date:  2019-04-06       Impact factor: 7.786

10.  Protein-peptide complex crystallization: a case study on the ERK2 mitogen-activated protein kinase.

Authors:  Gergő Gógl; Imre Törő; Attila Reményi
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-02-16
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