Literature DB >> 10618384

Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme.

G Yang1, C Cecconi, W A Baase, I R Vetter, W A Breyer, J A Haack, B W Matthews, F W Dahlquist, C Bustamante.   

Abstract

Recent advances in single molecule manipulation methods offer a novel approach to investigating the protein folding problem. These studies usually are done on molecules that are naturally organized as linear arrays of globular domains. To extend these techniques to study proteins that normally exist as monomers, we have developed a method of synthesizing polymers of protein molecules in the solid state. By introducing cysteines at locations where bacteriophage T4 lysozyme molecules contact each other in a crystal and taking advantage of the alignment provided by the lattice, we have obtained polymers of defined polarity up to 25 molecules long that retain enzymatic activity. These polymers then were manipulated mechanically by using a modified scanning force microscope to characterize the force-induced reversible unfolding of the individual lysozyme molecules. This approach should be general and adaptable to many other proteins with known crystal structures. For T4 lysozyme, the force required to unfold the monomers was 64 +/- 16 pN at the pulling speed used. Refolding occurred within 1 sec of relaxation with an efficiency close to 100%. Analysis of the force versus extension curves suggests that the mechanical unfolding transition follows a two-state model. The unfolding forces determined in 1 M guanidine hydrochloride indicate that in these conditions the activation barrier for unfolding is reduced by 2 kcal/mol.

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Year:  2000        PMID: 10618384      PMCID: PMC26629          DOI: 10.1073/pnas.97.1.139

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads.

Authors:  S B Smith; L Finzi; C Bustamante
Journal:  Science       Date:  1992-11-13       Impact factor: 47.728

2.  Single molecule force spectroscopy of spectrin repeats: low unfolding forces in helix bundles.

Authors:  M Rief; J Pascual; M Saraste; H E Gaub
Journal:  J Mol Biol       Date:  1999-02-19       Impact factor: 5.469

3.  The molecular elasticity of the extracellular matrix protein tenascin.

Authors:  A F Oberhauser; P E Marszalek; H P Erickson; J M Fernandez
Journal:  Nature       Date:  1998-05-14       Impact factor: 49.962

4.  Contact order, transition state placement and the refolding rates of single domain proteins.

Authors:  K W Plaxco; K T Simons; D Baker
Journal:  J Mol Biol       Date:  1998-04-10       Impact factor: 5.469

5.  Reversible unfolding of individual titin immunoglobulin domains by AFM.

Authors:  M Rief; M Gautel; F Oesterhelt; J M Fernandez; H E Gaub
Journal:  Science       Date:  1997-05-16       Impact factor: 47.728

6.  Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution.

Authors:  L H Weaver; B W Matthews
Journal:  J Mol Biol       Date:  1987-01-05       Impact factor: 5.469

7.  Entropic elasticity of lambda-phage DNA.

Authors:  C Bustamante; J F Marko; E D Siggia; S Smith
Journal:  Science       Date:  1994-09-09       Impact factor: 47.728

8.  Elasticity and unfolding of single molecules of the giant muscle protein titin.

Authors:  L Tskhovrebova; J Trinick; J A Sleep; R M Simmons
Journal:  Nature       Date:  1997-05-15       Impact factor: 49.962

9.  Rapid crystallization of T4 lysozyme by intermolecular disulfide cross-linking.

Authors:  D W Heinz; B W Matthews
Journal:  Protein Eng       Date:  1994-03

10.  Influence of the polymerization step alone on oxygen affinity and cooperativity during production of hyperpolymers from native hemoglobins with crosslinkers.

Authors:  W K Barnikol
Journal:  Artif Cells Blood Substit Immobil Biotechnol       Date:  1994
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  62 in total

1.  Native topology determines force-induced unfolding pathways in globular proteins.

Authors:  D K Klimov; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

2.  Biomolecular interactions measured by atomic force microscopy.

Authors:  O H Willemsen; M M Snel; A Cambi; J Greve; B G De Grooth; C G Figdor
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

3.  Force-induced denaturation of RNA.

Authors:  U Gerland; R Bundschuh; T Hwa
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

4.  Multiple conformations of PEVK proteins detected by single-molecule techniques.

Authors:  H Li; A F Oberhauser; S D Redick; M Carrion-Vazquez; H P Erickson; J M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-28       Impact factor: 11.205

Review 5.  From discrete protein kinetics to continuous Brownian dynamics: a new perspective.

Authors:  Hong Qian
Journal:  Protein Sci       Date:  2002-01       Impact factor: 6.725

6.  Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation.

Authors:  R B Best; B Li; A Steward; V Daggett; J Clarke
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

7.  Unfolding mechanics of holo- and apocalmodulin studied by the atomic force microscope.

Authors:  Rukman Hertadi; Atsushi Ikai
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

8.  The effect of core destabilization on the mechanical resistance of I27.

Authors:  David J Brockwell; Godfrey S Beddard; John Clarkson; Rebecca C Zinober; Anthony W Blake; John Trinick; Peter D Olmsted; D Alastair Smith; Sheena E Radford
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

9.  Cooperativity in forced unfolding of tandem spectrin repeats.

Authors:  Richard Law; Philippe Carl; Sandy Harper; Paul Dalhaimer; David W Speicher; Dennis E Discher
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

10.  Simultaneous force and fluorescence measurements of a protein that forms a bond between a living bacterium and a solid surface.

Authors:  Brian H Lower; Ruchirej Yongsunthon; F Paul Vellano; Steven K Lower
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

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