Literature DB >> 8171336

Relaxation of a single DNA molecule observed by optical microscopy.

T T Perkins1, S R Quake, D E Smith, S Chu.   

Abstract

Single molecules of DNA, visualized in video fluorescence microscopy, were stretched to full extension in a flow, and their relaxation was measured when the flow stopped. The molecules, attached by one end to a 1-micrometer bead, were manipulated in an aqueous solution with optical tweezers. Inverse Laplace transformations of the relaxation data yielded spectra of decaying exponentials with distinct peaks, and the longest time component (tau) increased with length (L) as tau approximately L 1.68 +/- 0.10. A rescaling analysis showed that most of the relaxation curves had a universal shape and their characteristic times (lambda t) increased as lambda t approximately L 1.65 +/- 0.13. These results are in qualitative agreement with the theoretical prediction of dynamical scaling.

Mesh:

Substances:

Year:  1994        PMID: 8171336     DOI: 10.1126/science.8171336

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  84 in total

1.  RecA polymerization on double-stranded DNA by using single-molecule manipulation: the role of ATP hydrolysis.

Authors:  G V Shivashankar; M Feingold; O Krichevsky; A Libchaber
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-06       Impact factor: 11.205

2.  Fast kinetics of chromatin assembly revealed by single-molecule videomicroscopy and scanning force microscopy.

Authors:  B Ladoux; J P Quivy; P Doyle; O du Roure; G Almouzni; J L Viovy
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

3.  Real-time observation of a single DNA digestion by lambda exonuclease under a fluorescence microscope field.

Authors:  S Matsuura ; J Komatsu; K Hirano; H Yasuda; K Takashima; S Katsura; A Mizuno
Journal:  Nucleic Acids Res       Date:  2001-08-15       Impact factor: 16.971

4.  Observation by fluorescence microscopy of transcription on single combed DNA.

Authors:  Z Gueroui; C Place; E Freyssingeas; B Berge
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

5.  Discrimination among individual Watson-Crick base pairs at the termini of single DNA hairpin molecules.

Authors:  Wenonah A Vercoutere; Stephen Winters-Hilt; Veronica S DeGuzman; David Deamer; Sam E Ridino; Joseph T Rodgers; Hugh E Olsen; Andre Marziali; Mark Akeson
Journal:  Nucleic Acids Res       Date:  2003-02-15       Impact factor: 16.971

6.  Stretching DNA with optical tweezers.

Authors:  M D Wang; H Yin; R Landick; J Gelles; S M Block
Journal:  Biophys J       Date:  1997-03       Impact factor: 4.033

7.  Combined nanomanipulation by atomic force microscopy and UV-laser ablation for chromosomal dissection.

Authors:  Robert W Stark; Francisco J Rubio-Sierra; Stefan Thalhammer; Wolfgang M Heckl
Journal:  Eur Biophys J       Date:  2003-01-28       Impact factor: 1.733

8.  The hydrodynamics of DNA electrophoretic stretch and relaxation in a polymer solution.

Authors:  Sean Ferree; Harvey W Blanch
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

9.  Revisiting polymer statistical physics to account for the presence of long-range-correlated structural disorder in 2D DNA chains.

Authors:  J Moukhtar; C Vaillant; B Audit; A Arneodo
Journal:  Eur Phys J E Soft Matter       Date:  2011-11-16       Impact factor: 1.890

10.  Fluctuation modes of nanoconfined DNA.

Authors:  Alena Karpusenko; Joshua H Carpenter; Chunda Zhou; Shuang Fang Lim; Junhan Pan; Robert Riehn
Journal:  J Appl Phys       Date:  2012-01-17       Impact factor: 2.546

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.