Literature DB >> 10393922

RecA polymerization on double-stranded DNA by using single-molecule manipulation: the role of ATP hydrolysis.

G V Shivashankar1, M Feingold, O Krichevsky, A Libchaber.   

Abstract

The polymerization of RecA on individual double-stranded DNA molecules is studied. A linear DNA (lambda DNA, 48.5 Kb), anchored at one end to a cover glass and at the other end to an optically trapped 3-micrometers diameter polystyrene bead, serves as a template. The elongation caused by RecA assembly is measured in the presence of ATP and ATP[gammaS]. By using force extension and hydrodynamic recoil, a value of the persistence length of the RecA-DNA complex is obtained. In the presence of ATP, the polymer length is unstable, first growing to saturation and then decreasing. This suggests a transient dynamics of association and dissociation for RecA on a double-stranded DNA, the process being controlled by ATP hydrolysis. Part of this dynamics is suppressed in the presence of ATP[gammaS], leading to a stabilized RecA-DNA complex. A one-dimensional nucleation and growth model is presented that may account for the protein assembly.

Entities:  

Mesh:

Substances:

Year:  1999        PMID: 10393922      PMCID: PMC22162          DOI: 10.1073/pnas.96.14.7916

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Stretching DNA with optical tweezers.

Authors:  M D Wang; H Yin; R Landick; J Gelles; S M Block
Journal:  Biophys J       Date:  1997-03       Impact factor: 4.033

2.  RecA binding to a single double-stranded DNA molecule: a possible role of DNA conformational fluctuations.

Authors:  J F Leger; J Robert; L Bourdieu; D Chatenay; J F Marko
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

3.  pH-dependent specific binding and combing of DNA.

Authors:  J F Allemand; D Bensimon; L Jullien; A Bensimon; V Croquette
Journal:  Biophys J       Date:  1997-10       Impact factor: 4.033

4.  Properties of the duplex DNA-dependent ATPase activity of Escherichia coli RecA protein and its role in branch migration.

Authors:  S C Kowalczykowski; J Clow; R A Krupp
Journal:  Proc Natl Acad Sci U S A       Date:  1987-05       Impact factor: 11.205

5.  The mechanics of winding and unwinding helices in recombination: torsional stress associated with strand transfer promoted by RecA protein.

Authors:  S M Honigberg; C M Radding
Journal:  Cell       Date:  1988-08-12       Impact factor: 41.582

Review 6.  Structure of RecA-DNA complex and mechanism of DNA strand exchange reaction in homologous recombination.

Authors:  M Takahashi; B Nordén
Journal:  Adv Biophys       Date:  1994

7.  Elongation of duplex DNA by recA protein.

Authors:  A Stasiak; E Di Capua; T Koller
Journal:  J Mol Biol       Date:  1981-09-25       Impact factor: 5.469

8.  The helicity of DNA in complexes with recA protein.

Authors:  A Stasiak; E Di Capua
Journal:  Nature       Date:  1982-09-09       Impact factor: 49.962

9.  Recognition of duplex DNA containing single-stranded regions by recA protein.

Authors:  S C West; E Cassuto; J Mursalim; P Howard-Flanders
Journal:  Proc Natl Acad Sci U S A       Date:  1980-05       Impact factor: 11.205

10.  Hydrolysis of nucleoside triphosphates catalyzed by the recA protein of Escherichia coli. Characterization of ATP hydrolysis.

Authors:  G M Weinstock; K McEntee; I R Lehman
Journal:  J Biol Chem       Date:  1981-08-25       Impact factor: 5.157

View more
  40 in total

1.  Two time constants for the binding of proteins to DNA from micromechanical data.

Authors:  M S Turner
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

2.  Kinetics and mechanism of DNA uptake into the cell nucleus.

Authors:  H Salman; D Zbaida; Y Rabin; D Chatenay; M Elbaum
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-05       Impact factor: 11.205

3.  Increased bending rigidity of single DNA molecules by H-NS, a temperature and osmolarity sensor.

Authors:  Roee Amit; Amos B Oppenheim; Joel Stavans
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

4.  Direct observation of the assembly of RecA/DNA complexes by atomic force microscopy.

Authors:  Bernie D Sattin; M Cynthia Goh
Journal:  Biophys J       Date:  2004-08-17       Impact factor: 4.033

5.  Twisting and untwisting a single DNA molecule covered by RecA protein.

Authors:  Renaud Fulconis; Aurélien Bancaud; Jean-Francois Allemand; Vincent Croquette; Marie Dutreix; Jean-Louis Viovy
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

6.  Fiber depolymerization.

Authors:  M S Turner; G Agarwal; C W Jones; J C Wang; S Kwong; F A Ferrone; R Josephs; R W Briehl
Journal:  Biophys J       Date:  2006-05-19       Impact factor: 4.033

7.  Mechanism of RecA-mediated homologous recombination revisited by single molecule nanomanipulation.

Authors:  Renaud Fulconis; Judith Mine; Aurélien Bancaud; Marie Dutreix; Jean-Louis Viovy
Journal:  EMBO J       Date:  2006-08-31       Impact factor: 11.598

8.  Resource Letter: LBOT-1: Laser-based optical tweezers.

Authors:  Matthew J Lang; Steven M Block
Journal:  Am J Phys       Date:  2003-03       Impact factor: 1.022

Review 9.  Single-molecule biophysics: at the interface of biology, physics and chemistry.

Authors:  Ashok A Deniz; Samrat Mukhopadhyay; Edward A Lemke
Journal:  J R Soc Interface       Date:  2008-01-06       Impact factor: 4.118

Review 10.  Single molecule techniques in DNA repair: a primer.

Authors:  Craig D Hughes; Michelle Simons; Cassidy E Mackenzie; Bennett Van Houten; Neil M Kad
Journal:  DNA Repair (Amst)       Date:  2014-05-10
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.